TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed6.A2WXV9_ORYSI/81-157
         (77 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig791  |  | 1 to 34061                                          28   1.5  
Cf_Contig675  |  | 1 to 73122                                          28   1.5  
Cf_Contig946  |  | 1 to 179534                                         27   3.4  
Cf_Contig1072  |  | 1 to 216731                                        26   5.9  
Cf_Contig743  |  | 1 to 77010                                          25   7.7  

>Cf_Contig791  |  | 1 to 34061
          Length = 34061

 Score = 27.7 bits (60), Expect = 1.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 45    IMLDDKGDQKETIRIDNWKREHIRQF 70
             ++ DD   +KE +R + W R H+R++
Sbjct: 32258 VLCDDLLQEKEKVRTERWSRLHLRRW 32335


>Cf_Contig675  |  | 1 to 73122
          Length = 73122

 Score = 27.7 bits (60), Expect = 1.5
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 3     AIIEVCMRK-LVFYPEIVGFLEEDKDD--FPYVEARYV 37
             AI E+C+   L+F+ EIV F E DKD   F   E R V
Sbjct: 14015 AIWEICVSSSLIFHLEIVSFTELDKDGMIFDLFETRNV 13902


>Cf_Contig946  |  | 1 to 179534
          Length = 179534

 Score = 26.6 bits (57), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 5     IEVCMRKLVFYPEIVGFL 22
             + VC R   FYP ++GFL
Sbjct: 24585 VRVCARVCAFYPRVLGFL 24532


>Cf_Contig1072  |  | 1 to 216731
          Length = 216731

 Score = 25.8 bits (55), Expect = 5.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 39    GSPPKLIMLDDKGDQKETIRIDNWKR 64
             G+ P+  ++  KG+++ T+R D+W+R
Sbjct: 65892 GNGPRHRVVTVKGERRGTVRRDHWRR 65815


>Cf_Contig743  |  | 1 to 77010
          Length = 77010

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 33    EARYVYGSPPKLIM 46
             E RYVYG+PPK ++
Sbjct: 76684 EPRYVYGAPPKSML 76643


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.321    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,685,528
Number of Sequences: 1089
Number of extensions: 40386
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 66
length of query: 77
length of database: 12,349,441
effective HSP length: 52
effective length of query: 25
effective length of database: 12,292,813
effective search space: 307320325
effective search space used: 307320325
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)