TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed6.A2WXV9_ORYSI/81-157
         (77 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont...    27   1.8  
gi|325191276|emb|FR824389.1| Albugo laibachii Nc14, genomic cont...    27   1.8  
gi|325187045|emb|FR824173.1| Albugo laibachii Nc14, genomic cont...    25   8.7  
gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic cont...    25   8.7  

>gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig
             CONTIG_11_NC14_v4_227311_235
          Length = 227311

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 6     EVCMRKLVFYPEIVGFLEEDKD 27
             E+C  ++VFYP ++  + E KD
Sbjct: 50719 ELCFSRMVFYPSVIFQISEPKD 50784


>gi|325191276|emb|FR824389.1| Albugo laibachii Nc14, genomic contig
             CONTIG_344_NC14_v4_26189_1254
          Length = 26189

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +3

Query: 13    VFYPEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWK 63
             +FY E  G +++  + F   +A +V   PP  +++D     + ++++DNW+
Sbjct: 10989 MFYDECHGGIKDYPESFK--KAFHVAEPPPCKVIVDAIRSNQTSLQLDNWR 11135


>gi|325187045|emb|FR824173.1| Albugo laibachii Nc14, genomic contig
            CONTIG_128_NC14_v4_69976_248
          Length = 69976

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 15   YPEIVGFLEEDKDDFPYVEARYVY 38
            Y E++  ++E  +D+PY    Y+Y
Sbjct: 2241 YDEMLSHVQESDEDYPYPYGPYLY 2170


>gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic contig
             CONTIG_168_NC14_v4_55484_241
          Length = 55484

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 30    PYVEARYVYGSPPKLIMLDDKGDQKETI 57
             P++ +RY  G P   I + D G++K ++
Sbjct: 54013 PFIRSRYCRGVPDSKIRIYDVGNKKASV 54096


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,734,096
Number of Sequences: 3816
Number of extensions: 27951
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of query: 77
length of database: 10,913,379
effective HSP length: 52
effective length of query: 25
effective length of database: 10,714,947
effective search space: 267873675
effective search space used: 267873675
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)