TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71467677|emb|CAI44701.1| selenoprotein M [Suberites
domuncula]
         (123 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1020  |  | 1 to 153148                                        27   2.8  
Cf_Contig866  |  | 1 to 136535                                         27   2.8  
Cf_Contig1015  |  | 1 to 112272                                        26   6.3  
Cf_Contig876  |  | 1 to 197301                                         26   6.3  

>Cf_Contig1020  |  | 1 to 153148
          Length = 153148

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -1

Query: 45     NDHLPDYPDLEIKYIGGADPVMVLMDAEYQEVTRVSVIKMSEQEIIDLLASHNIVKRSPE 104
              N H  + P+ E++  G    +      + +  +RV      +  I  LLA     K+  E
Sbjct: 132091 NGHSQERPEREVESEGQHRGIQTHTYTQKKNASRVESPASLKIRIATLLARSE--KKKIE 131918

Query: 105    EAEAEEDTEPWEQDERE 121
                + E  + PW + ERE
Sbjct: 131917 YKKGERKSAPWREGERE 131867


>Cf_Contig866  |  | 1 to 136535
          Length = 136535

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
 Frame = +2

Query: 10    LCVSLAIGVGEIKKARLESCSG--------XRLNSLPKVKRFINDHLP 49
             LC    +GVG  +  +L+SC G           N +P +  ++  HLP
Sbjct: 78863 LCARCCVGVGSSRWEQLQSCVGTVEKYWKELY*NEMPVMVMYVTKHLP 79006


>Cf_Contig1015  |  | 1 to 112272
          Length = 112272

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
 Frame = -1

Query: 10    LCVSLAIGVGEIKKARLESCSGXRLNSLPKVKRFINDHLPDYPDLEIKYIGGADPVMVLM 69
             +C++ ++G+ E +    E C G        V  F+ +HL D P   ++           +
Sbjct: 24402 VCMARSLGIHESQSRFQEVCIGRSGAFAEFVTPFLKEHLGDQPAFTVEN----------L 24253

Query: 70    DAEYQEVTRVSVIKMSEQEIIDLLASHNIVKRSPEEA------EAEEDTEPWEQDEREEL 123
                YQ V +   I++   E+   L  H I++   E A      EAE+    W +  +E L
Sbjct: 24252 RKTYQRV-KPGYIRIYADEVCYPL--HVIMRYEMERALIEGKLEAEDIPRVWNEKMKEYL 24082


>Cf_Contig876  |  | 1 to 197301
          Length = 197301

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
 Frame = -1

Query: 39     KVKRFINDHLPDYPDL--EIKYIGGADPVMVLMDAEYQEVTRVSVIKMSEQE---IIDLL 93
              KV     +  P   DL  E K++   +    LM+   +    + ++K  EQ+   +  +L
Sbjct: 172008 KVVTLPGESAPSELDLYNERKWLNAVEATC-LMEQRARMDECMDILKAVEQDHSNVRSVL 171832

Query: 94     ASHNIVKRSPEEAEAEEDTEPWEQDEREE 122
              +S++ ++  P+E EAE   +  E   REE
Sbjct: 171831 SSYDTLRNRPKETEAERARKLAEAVRREE 171745


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.315    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,472,952
Number of Sequences: 1089
Number of extensions: 49366
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 105
length of query: 123
length of database: 12,349,441
effective HSP length: 88
effective length of query: 35
effective length of database: 12,253,609
effective search space: 428876315
effective search space used: 428876315
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)