TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71467677|emb|CAI44701.1| selenoprotein M [Suberites
domuncula]
         (123 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850580|gb|ADNL01000023.1| Astrammina rara contig00024, who...    21   9.7  

>gi|330850580|gb|ADNL01000023.1| Astrammina rara contig00024, whole
            genome shotgun sequence
          Length = 11445

 Score = 20.8 bits (42), Expect = 9.7
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +2

Query: 76   VTRVSVIKMSEQEIIDLLASHNIVKRSPEEAEAEEDTEPWEQDEREE 122
            +T  + IKMS +++      + +   +    +  E  +PW++  RE+
Sbjct: 9368 ITVATNIKMSRKQLAQQYNMYTLASTA*FNVQ*VEPGKPWQKR*RED 9508


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.315    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,103
Number of Sequences: 3231
Number of extensions: 1491
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 123
length of database: 483,365
effective HSP length: 65
effective length of query: 58
effective length of database: 273,350
effective search space: 15854300
effective search space used: 15854300
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 42 (20.8 bits)