TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed5.Q4A3I8_SUBDO/23-99
         (77 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig22  |  | 1 to 33293                                           26   3.9  

>Lt_contig22  |  | 1 to 33293
          Length = 33293

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 25   HLPDYPDLEIKYIGGADPVMV 45
            H+P YPDL   + GG D   V
Sbjct: 8977 HIPRYPDLPTIFFGGGDGASV 8915


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,198,074
Number of Sequences: 7267
Number of extensions: 18842
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of query: 77
length of database: 10,532,946
effective HSP length: 51
effective length of query: 26
effective length of database: 10,162,329
effective search space: 264220554
effective search space used: 264220554
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)