TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed5.Q4A3I8_SUBDO/23-99
         (77 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...    25   6.4  
gi|328867744|gb|GL883024.1| Dictyostelium fasciculatum unplaced ...    25   8.4  
gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ...    25   8.4  

>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence
          Length = 3408800

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 11      RLNSLPKVKRFINDHLPDYPDLE 33
               +++++PK+KR I D +PD P +E
Sbjct: 3138206 KVSTVPKLKRRIADPVPDVPLVE 3138274


>gi|328867744|gb|GL883024.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01DZOHE-5, whole genome shotgun
              sequence
          Length = 761004

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 24     DHLPDYPDLEIKYIGGADPVMVLMDAEYQEVTRVSVIKMSEQEIIDLLAS 73
              DH+    D  + +  G+D +  L+D     +  +S +K S Q +ID   S
Sbjct: 601038 DHVEIGDDRRMIFESGSDHLEQLLDHVLHTLVNLSFMKNSTQTVIDTAES 601187


>gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence
          Length = 1908399

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 18      VKRFINDHLPDYPDLEIKY--IGGADPVMVLMDAEYQEVTRVSVIKMSEQEIIDLL 71
               +K +IN ++  +PDL  KY  +   D  + L D + + V      K  E+ ++ LL
Sbjct: 1583550 IKEYINGYIEQFPDLLKKYTVVAKVDDEVQLTDEQKKNVKMSD--KRKERILLKLL 1583389


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,049,076
Number of Sequences: 25
Number of extensions: 17539
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 13
length of query: 77
length of database: 10,339,736
effective HSP length: 52
effective length of query: 25
effective length of database: 10,338,436
effective search space: 258460900
effective search space used: 258460900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)