TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed5.Q4A3I8_SUBDO/23-99
         (77 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    39   8e-04
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    27   1.9  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    25   9.2  

>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole
               genome shotgun sequence
          Length = 4923596

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = -1

Query: 11      RLNSLPKVKRFINDHLPDYPDLEIKYIGGADPVMVLMDAE 50
               RL + P++K FIN+    Y  L +KY  GA+P + L+D+E
Sbjct: 1140053 RLGAHPQIKEFINNKAKLYSKLSVKYENGANPRLTLVDSE 1139934


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 23      NDHLPDYPDLEIKYIGGADPVMVL 46
               ND L  YP+L++ ++GG  P+ +L
Sbjct: 1742610 ND*LK*YPNLKVSHVGGITPLSIL 1742681



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 19     KRFINDHLPDYPDLEIKYIGGADPVMVLMDAEYQEVTRVSVIKMSEQEIIDLLAS 73
              ++ IN +   YP+LEI      D ++V    +  E+  +S I  +      LL+S
Sbjct: 654268 RKGINKYSNSYPNLEISCFNSEDSIVV--SGDENELKSLSTILQNNNIFSSLLSS 654110


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 12      LNSLPKVKRFINDHLPDYPDLEIKYI 37
               LN    + +F+N HL  +  L+IKY+
Sbjct: 6459199 LNFYEDIVKFLNYHLKKHDQLQIKYM 6459276


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,002,144
Number of Sequences: 6
Number of extensions: 15374
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 22
length of query: 77
length of database: 11,314,357
effective HSP length: 52
effective length of query: 25
effective length of database: 11,314,045
effective search space: 282851125
effective search space used: 282851125
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)