TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed4.Q4PMN9_IXOSC/30-106
         (77 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5025  |  | 1 to 6507                                          28   0.78 
Lt_contig4310  |  | 1 to 1849                                          26   5.0  
Lt_contig687  |  | 1 to 2703                                           26   5.0  
Lt_contig5222  |  | 1 to 7105                                          25   6.6  
Lt_contig540  |  | 1 to 29965                                          25   8.6  

>Lt_contig5025  |  | 1 to 6507
          Length = 6507

 Score = 28.5 bits (62), Expect = 0.78
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -2

Query: 37   IGGAKPEVLFLNMNDEEVERHSLEGRSRDECNQL 70
            + GA+ ++L+L  +D+E   HSL G + D+ ++L
Sbjct: 2822 VRGARSDLLYLVHDDDEALFHSLSGSAGDQLSRL 2721


>Lt_contig4310  |  | 1 to 1849
          Length = 1849

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 3   RVESCGGXRLNAYPEVKKFVY 23
           R   CGG R   YP  + FVY
Sbjct: 154 RARVCGGGRERTYPRTQVFVY 216


>Lt_contig687  |  | 1 to 2703
          Length = 2703

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 11   RLNAYPE------VKKFVYDDIPLFHNVEFKVIGGAKPEVLFLNMNDEEVERHSLEGRSR 64
            RLNA PE      ++  V D + L        +GGA         +++ VERHS++ R+ 
Sbjct: 2039 RLNALPEEGMIEVLRSVVVDALQLR-------VGGA--------FHNQLVERHSIQWRAL 2173

Query: 65   DECNQL 70
            DE  QL
Sbjct: 2174 DELVQL 2191


>Lt_contig5222  |  | 1 to 7105
          Length = 7105

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 44   VLFLNMNDEEVERHSLEGRSRDECNQLLL 72
            VLF   N+E   RH  EG+  D CN+  L
Sbjct: 2852 VLFRRTNEE---RHCSEGQHLDRCNETAL 2929


>Lt_contig540  |  | 1 to 29965
          Length = 29965

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 26    IPLFHNVEFKVIGGAKPEVLFLNMNDEEVERHSLEGR 62
             IP    ++ + I  +  ++LF    DE VER   EGR
Sbjct: 17150 IPYAFFIDGEQINSSVQDILFRRQKDEYVERMLKEGR 17040


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.320    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,898,123
Number of Sequences: 7267
Number of extensions: 28900
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of query: 77
length of database: 10,532,946
effective HSP length: 51
effective length of query: 26
effective length of database: 10,162,329
effective search space: 264220554
effective search space used: 264220554
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)