TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed4.Q4PMN9_IXOSC/30-106
         (77 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ...    28   1.3  
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    25   8.4  

>gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence
          Length = 1919465

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 24      DDIPLFHNVEFKVIGGAKPEVLFL 47
               D+ PLF  + F V+ GAKP + FL
Sbjct: 1555106 DNDPLFGGLSFYVVPGAKPPLAFL 1555177


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
              sequence
          Length = 4166812

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 20     KFVYDDIPLFHNVEFKVI 37
              KF++DDI LFH++   +I
Sbjct: 361692 KFIFDDIYLFHSLTIIII 361639


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.320    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,837,236
Number of Sequences: 25
Number of extensions: 33487
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 22
length of query: 77
length of database: 10,339,736
effective HSP length: 52
effective length of query: 25
effective length of database: 10,338,436
effective search space: 258460900
effective search space used: 258460900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)