TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed4.Q4PMN9_IXOSC/30-106
         (77 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic cont...    27   2.3  
gi|325193381|emb|FR824648.1| Albugo laibachii Nc14, genomic cont...    26   3.9  
gi|325193417|emb|FR824657.1| Albugo laibachii Nc14, genomic cont...    25   6.7  
gi|325194029|emb|FR824947.1| Albugo laibachii Nc14, genomic cont...    25   8.7  

>gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic contig
             CONTIG_1_NC14_v4_580768_240
          Length = 580768

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 16    PEVKKFVYDDIPLFHNVEFKVIGGAKPEVLFLN 48
             P + +FVYD   +     F++I G   ++ F+N
Sbjct: 61994 PALHEFVYDPEEMIETYSFEIIEGNDDQIYFIN 62092



 Score = 25.4 bits (54), Expect = 6.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 20     KFVYDDIPLF 29
              KFVYDD+PLF
Sbjct: 510688 KFVYDDVPLF 510717


>gi|325193381|emb|FR824648.1| Albugo laibachii Nc14, genomic contig
            CONTIG_650_NC14_v4_8448_118
          Length = 8448

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 17   EVKKFVYDDIPLFHNVEFKV-IGGAKPEVLFLNMNDEEVERHSLEGRSR 64
            E  KF    +PLFH V+ KV +GG +  ++ + +    + + S+ GR R
Sbjct: 7761 ETAKFDRVFLPLFHRVKMKVEVGGWR*RLVRI-VTSTSIRKPSVNGRDR 7618


>gi|325193417|emb|FR824657.1| Albugo laibachii Nc14, genomic contig
           CONTIG_665_NC14_v4_8083_117
          Length = 8083

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 17  EVKKFVYDDIPLFHNVEFKV-IGGAKPEVLFLNMNDEEVERHSLEGRSR 64
           E  KF    +PLFH V+ KV +GG +  ++ +      V + S+ GR R
Sbjct: 135 EPAKFDRVFLPLFHGVKMKVEVGGWR*RLVRI-FTSTSVRKPSVNGRDR 278


>gi|325194029|emb|FR824947.1| Albugo laibachii Nc14, genomic contig
            CONTIG_1281_NC14_v4_2733_251
          Length = 2733

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 26   IPLFHNVEFKV-IGGAKPEVLFLNMNDEEVERHSLEGRSR 64
            +PLFH+V+ KV +GG +  ++ + +    + + S+ GR R
Sbjct: 2038 LPLFHSVKMKVEVGGWR*RLVRI-VTSTSIRKPSVNGRDR 1922


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.320    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,768,531
Number of Sequences: 3816
Number of extensions: 28130
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of query: 77
length of database: 10,913,379
effective HSP length: 52
effective length of query: 25
effective length of database: 10,714,947
effective search space: 267873675
effective search space used: 267873675
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)