TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed3.A5J2A1_LITVA/31-107
         (77 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_31                                                       28   2.7  
PHYCAscaffold_57                                                       27   6.0  
PHYCAscaffold_7                                                        27   6.0  
PHYCAscaffold_327                                                      26   7.8  
PHYCAscaffold_19                                                       26   7.8  
PHYCAscaffold_13                                                       26   7.8  

>PHYCAscaffold_31
          Length = 686815

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 28     LFHNAKFKQIGGAPPELVLLNRFDQVVERLPL 59
              LFH+ K   IGG P  L+ L RF ++ +  P+
Sbjct: 431070 LFHDKKRA*IGGKPSSLLSLERFTKLRDGTPM 431165


>PHYCAscaffold_57
          Length = 397303

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 11    RLNRLPE-VKKFIHEDIPLFHNAKFKQIGGAPPELVLLNRFDQVVER 56
             R NR    VK+ I     LFH+ K   IGG P  L+ L R  Q   R
Sbjct: 71274 RKNRFSHPVKRCIFLSPQLFHDKKRA*IGGKPSCLLSLERLHQTPRR 71134


>PHYCAscaffold_7
          Length = 1368812

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 5      ESCGGXRLNRLPEVKKFIHEDIPLFHNAKFKQIGGAPPELVLL 47
              +  GG R  ++ ++++ I  ++PL H   FK +G  PP  VLL
Sbjct: 133852 DDIGGCR-RQMAQIREMI--ELPLRHPQLFKTLGVKPPRGVLL 133733


>PHYCAscaffold_327
          Length = 8127

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -2

Query: 2    ARVESCG----GXRLNRLPEVKKFIHEDIPLFHNAKF 34
            A+ +S G    G R++ +P   +F+H  + +FH ++F
Sbjct: 7472 AQTDSSGNCTNGRRISNVPITLRFMHNILSIFHQSEF 7362


>PHYCAscaffold_19
          Length = 944885

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 13     NRLPEVKKFIHEDIPLFHNAKFKQIGGAPPEL-VLLNRFDQVVERLPLD 60
              NRL E  K + +D    HN +  QIG   PE   L+ R  +V  +L +D
Sbjct: 372336 NRLDEWLKNLGDDKTPLHNEEELQIGVEEPEARELVKRLLRVYRKLTMD 372482


>PHYCAscaffold_13
          Length = 1060349

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 13     NRLPEVKKFIHEDIPLFHNAKFKQIGGAPPEL-VLLNRFDQVVERLPLD 60
              NRL E  K + +D    HN +  QIG   PE   L+ R  +V  +L +D
Sbjct: 953733 NRLDEWLKNLGDDKTPLHNEEELQIGVEEPEARELVKRLLRVYRKLTMD 953587


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.323    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,780,156
Number of Sequences: 917
Number of extensions: 64917
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 104
length of query: 77
length of database: 21,341,249
effective HSP length: 52
effective length of query: 25
effective length of database: 21,293,565
effective search space: 532339125
effective search space used: 532339125
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)