TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed3.A5J2A1_LITVA/31-107
         (77 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig4872  |  | 1 to 5893                                          28   1.3  
Lt_contig1377  |  | 1 to 11472                                         28   1.3  
Lt_contig5987  |  | 1 to 11060                                         25   8.6  
Lt_contig5121  |  | 1 to 7726                                          25   8.6  
Lt_contig7265  |  | 1 to 10690                                         25   8.6  

>Lt_contig4872  |  | 1 to 5893
          Length = 5893

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 11   RLNRLPEVKKFIHEDIPLFHNAKFKQI 37
            RL  LPE ++ IHED+  +H    +Q+
Sbjct: 2884 RLKALPEDEQMIHEDVTEYHLVSRRQV 2964


>Lt_contig1377  |  | 1 to 11472
          Length = 11472

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 11   RLNRLPEVKKFIHEDIPLFHNAKFKQI 37
            RL  LPE ++ IHED+  +H    +Q+
Sbjct: 8463 RLKALPEDEQMIHEDVTEYHLVSRRQV 8543


>Lt_contig5987  |  | 1 to 11060
          Length = 11060

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 25   DIPLFHNAKFKQIGGAPPELVLL 47
            ++P+ H  K+ Q+G  PP+ VLL
Sbjct: 1437 ELPITHPEKYTQLGIDPPKGVLL 1369


>Lt_contig5121  |  | 1 to 7726
          Length = 7726

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 28   LFHNAKFKQIGGAPPE-LVLLNRFDQVVERLPLDKLS 63
            L H    K IGGAPPE    L R D V   L + K S
Sbjct: 3780 LMHIVLDKAIGGAPPE*FSELTRADSVSRHL*MTKKS 3670


>Lt_contig7265  |  | 1 to 10690
          Length = 10690

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 3    RVESCGGXRLNRLPEVKKFIHEDIP 27
            R   C G RL  +  V+ F+H+D P
Sbjct: 4453 RFVRCSGLRLCNVLVVRPFVHQDYP 4379


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.323    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,473,943
Number of Sequences: 7267
Number of extensions: 42512
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of query: 77
length of database: 10,532,946
effective HSP length: 51
effective length of query: 26
effective length of database: 10,162,329
effective search space: 264220554
effective search space used: 264220554
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)