TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed3.A5J2A1_LITVA/31-107
         (77 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328870360|gb|GL883017.1| Dictyostelium fasciculatum unplaced ...    28   1.3  
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    27   2.9  
gi|328868039|gb|GL883023.1| Dictyostelium fasciculatum unplaced ...    26   4.9  
gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ...    25   6.4  

>gi|328870360|gb|GL883017.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-190b03.r1-5, whole genome shotgun
              sequence
          Length = 548609

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 5      ESCGGXRLNRLPEVKKFIHEDIPLFHNAKFKQIGGAPPELVLL 47
              +  GG R  +L ++++ +  ++PL H   FK IG  PP+ +LL
Sbjct: 149959 DDIGGVR-KQLGQIRELV--ELPLRHPQLFKNIGVKPPKGILL 149840


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 25      DIPLFHNAKFKQIGGAPPELVLL 47
               ++PL H+  +KQIG  PP  VLL
Sbjct: 2910627 ELPLTHHNLYKQIGIDPPRGVLL 2910559


>gi|328868039|gb|GL883023.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01BBABR-5, whole genome shotgun
              sequence
          Length = 470708

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 37     IGGAPPELVLLNRFDQVV--ERLPLDKLSREECNKLMLK 73
              +G  PP + LLNR++Q V   ++P++ +   + N L L+
Sbjct: 348715 LGSIPPLVYLLNRYNQKVWLHQMPIEMILLLKMNPLPLQ 348599


>gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun
               sequence
          Length = 2485436

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 7       CGGXRLNRLPEVKKFIHEDI 26
               CG   LNRLP  K+ IH  I
Sbjct: 1740878 CGNVPLNRLPATKRQIHHII 1740937


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.323    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,465,190
Number of Sequences: 25
Number of extensions: 26717
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 22
length of query: 77
length of database: 10,339,736
effective HSP length: 52
effective length of query: 25
effective length of database: 10,338,436
effective search space: 258460900
effective search space used: 258460900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)