TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed3.A5J2A1_LITVA/31-107
         (77 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1069  |  | 1 to 371363                                        27   2.6  
Cf_Contig738  |  | 1 to 50143                                          27   3.4  
Cf_Contig904  |  | 1 to 269533                                         26   5.9  
Cf_Contig1071  |  | 1 to 673414                                        25   7.7  

>Cf_Contig1069  |  | 1 to 371363
          Length = 371363

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 5      ESCGGXRLNRLPEVKKFIHEDIPLFHNAKFKQIGGAPPELVLL 47
              ES  G RL RLPE+   +HE     H    +++G     + LL
Sbjct: 164671 ESLRGVRLERLPELVLAVHEPRAHLHPCVGQELGADVDVVALL 164799


>Cf_Contig738  |  | 1 to 50143
          Length = 50143

 Score = 26.6 bits (57), Expect = 3.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 14    RLPEVKKFIHEDIPLFHNAKFKQIGGAPPELVLLNRFDQVVER 56
             RL E+KK   E  P    AK+K IG  PP+  L  R    +ER
Sbjct: 19863 RLAELKKRREELTPTAE-AKYKTIGPRPPKQRLTKRQKAALER 19988


>Cf_Contig904  |  | 1 to 269533
          Length = 269533

 Score = 25.8 bits (55), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 18     VKKFIHEDIP-LFHNAKFKQIGGAPPELVLLNR 49
              V  +  E IP LF N  F+  GGAPP L +  R
Sbjct: 196460 VSSYFLEAIPFLFLNITFEVRGGAPPSLNVAQR 196558


>Cf_Contig1071  |  | 1 to 673414
          Length = 673414

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 39   GAPPELVLLNRFDQVVERLPL 59
            G PP   +L RF  ++ RLPL
Sbjct: 5868 GRPPRRAVLKRFCSLIRRLPL 5930


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.323    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,015,235
Number of Sequences: 1089
Number of extensions: 46459
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 65
length of query: 77
length of database: 12,349,441
effective HSP length: 52
effective length of query: 25
effective length of database: 12,292,813
effective search space: 307320325
effective search space used: 307320325
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)