TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed3.A5J2A1_LITVA/31-107
         (77 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325182986|emb|FR824080.1| Albugo laibachii Nc14, genomic cont...    27   1.8  
gi|325192114|emb|FR824434.1| Albugo laibachii Nc14, genomic cont...    27   2.3  
gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic cont...    26   5.1  
gi|325190516|emb|FR824316.1| Albugo laibachii Nc14, genomic cont...    26   5.1  
gi|325184317|emb|FR824102.1| Albugo laibachii Nc14, genomic cont...    25   6.7  
gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic cont...    25   8.7  
gi|325182692|emb|FR824076.1| Albugo laibachii Nc14, genomic cont...    25   8.7  
gi|325188294|emb|FR824215.1| Albugo laibachii Nc14, genomic cont...    25   8.7  

>gi|325182986|emb|FR824080.1| Albugo laibachii Nc14, genomic contig
              CONTIG_35_NC14_v4_137162_207
          Length = 137162

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 20     KFIHEDIPLFHNAKFKQIGGAPPELVLLNRFDQVVER 56
              +++H+   LF N K   +  APP L+  N+ DQ+  R
Sbjct: 114519 RYLHD---LFSNPKLNDL--APPMLIACNKMDQIASR 114614


>gi|325192114|emb|FR824434.1| Albugo laibachii Nc14, genomic contig
             CONTIG_391_NC14_v4_22214_293
          Length = 22214

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 11    RLNRLPEVKKFIHEDIPLFHNAKFKQIGG 39
             RL+R P + + +H+D+P+  + + K + G
Sbjct: 18440 RLDRNPRLLQHVHDDLPMVSSPRLKNLFG 18526


>gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic contig
             CONTIG_64_NC14_v4_99844_253
          Length = 99844

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 5     ESCGGXRLNRLPEVKKFIHEDIPLFHNAKFKQIGGAPPELVLL 47
             +  GG R  ++ ++++ I  ++PL H   F+ +G  PP  VLL
Sbjct: 76403 DDIGGCR-RQMAQIREMI--ELPLRHPTLFRTLGVKPPRGVLL 76522


>gi|325190516|emb|FR824316.1| Albugo laibachii Nc14, genomic contig
             CONTIG_271_NC14_v4_35108_217
          Length = 35108

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 25    DIPLFHNAKFKQIGGAPPELVLL 47
             ++PL H   +KQIG  PP  +L+
Sbjct: 23235 ELPLTHTELYKQIGVDPPRGILM 23167


>gi|325184317|emb|FR824102.1| Albugo laibachii Nc14, genomic contig
             CONTIG_57_NC14_v4_107809_290
          Length = 107809

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 27    PLFHNAKFKQIGGAPPELVLLNRFDQVVERLPLDKLSREECNKLMLKKG 75
             PL H   F ++G  PP+ VLL       + +    L+ E C   +  KG
Sbjct: 20217 PLTHPEAFTRMGIRPPKGVLLYGPPGCSKTMTAKALATESCMNFLAVKG 20071


>gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic contig
              CONTIG_1_NC14_v4_580768_240
          Length = 580768

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 26     IPLFHNAKFKQIGGAPPELVLLN 48
              +P+ H  KF  +G  PP+ VLL+
Sbjct: 464574 LPMTHKEKFDALGITPPKGVLLH 464506


>gi|325182692|emb|FR824076.1| Albugo laibachii Nc14, genomic contig
             CONTIG_31_NC14_v4_147313_234
          Length = 147313

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 25    DIPLFHNAKFKQIGGAPPELVLL 47
             ++PL H  KF  +G  PP+ VLL
Sbjct: 12842 ELPLLHPEKFINLGIDPPKGVLL 12910


>gi|325188294|emb|FR824215.1| Albugo laibachii Nc14, genomic contig
             CONTIG_170_NC14_v4_55297_237
          Length = 55297

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 52    QVVERLPLDKLSREECNKLM 71
             + +E LPL  L +E+C KL+
Sbjct: 46953 EALEALPLSSLDQEQCQKLV 47012


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.323    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,846,972
Number of Sequences: 3816
Number of extensions: 31160
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of query: 77
length of database: 10,913,379
effective HSP length: 52
effective length of query: 25
effective length of database: 10,714,947
effective search space: 267873675
effective search space used: 267873675
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)