TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed2.SELM_DANRE/29-105
         (77 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.365...    24   9.3  

>gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.3657,
            whole genome shotgun sequence
          Length = 20249

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 52   EELDRIPLSEMTRAEINKL 70
            EEL+  PLSE  R+E+N L
Sbjct: 9304 EELEMKPLSENLRSELNVL 9360


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.323    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,270,209
Number of Sequences: 3680
Number of extensions: 13948
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of query: 77
length of database: 5,120,956
effective HSP length: 51
effective length of query: 26
effective length of database: 4,933,276
effective search space: 128265176
effective search space used: 128265176
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)