TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed2.SELM_DANRE/29-105
         (77 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    26   4.9  
gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ...    26   4.9  
gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ...    25   6.4  
gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ...    25   6.4  
gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ...    25   6.4  
gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...    25   8.4  

>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 16      REVKAFVTQDIPLYHNLVMKHIPGADPELVLLNHYYEELDRI 57
               RE+    T +I +Y++LV       D  + LLN YY  + ++
Sbjct: 3084028 RELLVETTVNIGVYNDLVSSTCSSYDCTVSLLNDYYASVSQV 3084153



 Score = 25.0 bits (53), Expect = 8.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 4       VETCGGXQLNRMREVKAFVTQDIPLYHNLVMKHI 37
               ++TC   + N ++    F  Q I LYH +   H+
Sbjct: 1996372 IQTCTTNKHNNLKRYVTFNVQIITLYHRINPSHL 1996271


>gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun
              sequence
          Length = 2750715

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 39     GADPELVLLNHYYEELDRIPLSEMTRAEINKLLAE 73
              G   E  +L+ Y E  DR+   E++ AE  KLL +
Sbjct: 224336 GLSEEKAILDEYDEITDRLDEEELSDAERKKLLVD 224440



 Score = 25.4 bits (54), Expect = 6.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 38     PGADPELVLLNHYYEELDRI 57
              PG    LV +  YYE LDR+
Sbjct: 135474 PGTMESLVFIYQYYEHLDRV 135415


>gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence
          Length = 1919465

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 33      VMKHIPGADPELVLLNHYYEELDRIPLS 60
               V++H    D   +++   Y+++DR PLS
Sbjct: 1650223 VVRHTYTQDTNTIIMKRVYQDIDRQPLS 1650140


>gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence
          Length = 3468650

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 7       CGGXQLNRMREVKAFVTQDIPLYHNLVMK 35
               CGG  +  +  V A +  D P+YHN ++K
Sbjct: 3254398 CGGLGIVLVPFVFARIIPDKPIYHNNILK 3254484


>gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun
              sequence
          Length = 1770755

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 17     EVKAFVTQDIPLYHNLVMK 35
              E+KA   +D+PL +NLVM+
Sbjct: 612390 EIKAAERKDVPLIYNLVME 612446


>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence
          Length = 3408800

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +3

Query: 43      ELVLLNHYYEELDRIPLSEMTRAEINKLLAELGF 76
               +++LLNH Y  L  + +S++ + ++N  + ++ F
Sbjct: 3084201 KMILLNHIYPMLINLQISKIKQIKLN*FINQITF 3084302


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.323    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,708,323
Number of Sequences: 25
Number of extensions: 33701
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 52
length of query: 77
length of database: 10,339,736
effective HSP length: 52
effective length of query: 25
effective length of database: 10,338,436
effective search space: 258460900
effective search space used: 258460900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)