TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed2.SELM_DANRE/29-105
         (77 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    29   0.64 
gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    28   0.83 
gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso...    28   1.1  
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    27   3.2  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    25   7.1  

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole
               genome shotgun sequence
          Length = 5450249

 Score = 28.9 bits (63), Expect = 0.64
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -3

Query: 48      NHYYEELDRIPLSEMTRAEINKLLAELG 75
               NHY+ + DR+P++  + A++++ + + G
Sbjct: 2612187 NHYFSDFDRLPIAAASLAQVHRAITKEG 2612104


>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole
               genome shotgun sequence
          Length = 4923596

 Score = 28.5 bits (62), Expect = 0.83
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 42      PELVLLNHYYEELDRIPLSEMTRAEINKLLAELGFY 77
               P L+ + +YY  LD++ + E   A +N+ L +L FY
Sbjct: 1615997 PLLLTIINYYYLLDQLNIHEYNEAYLNQPLMKLNFY 1616104



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 20      AFVTQDIPLYHNLVMKHIPGADPELVLLNHY 50
               ++V   + L HN+++ ++   D   +L+ HY
Sbjct: 2949327 SYVQNQVELPHNVLIHYVDSQDQSFILV*HY 2949235



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 19      KAFVTQDIPLYHNLVMKHIPGADPELVLLNHYYEELDRIPL 59
               K F+  DI  YH + +K    A+P+ + +  YY  +   PL
Sbjct: 3394123 KDFIVSDI--YHLMGLKDTNTANPKTIKVKEYYYFMSPSPL 3394239



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 33      VMKHIPGADPELVLLNHYYEELDRIPLSEMTRAEINKLLAEL 74
               ++K      P+L+L+     E D IP+S++    ++KL   L
Sbjct: 3484528 IVKTTNDLKPDLILITGDLIERDPIPISQLYNKHLSKLKVSL 3484653


>gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole
               genome shotgun sequence
          Length = 3602379

 Score = 28.1 bits (61), Expect = 1.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 28      LYHNLVMKHIPGADPELVLLNHYY 51
               L+H+L+  HI   D + + LN+YY
Sbjct: 1074112 LFHSLISNHIKSVDLDYLHLNYYY 1074041


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 18      VKAFVTQDIPLYHNLVMKHIPGADPELVLLNH-YYEELD 55
               V  F+  D P   NL+++  P   P+LVLL+H  Y+++D
Sbjct: 4694366 VHGFLHSD-PHPGNLLVRKTPNGKPDLVLLDHGLYKKID 4694253


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 25.4 bits (54), Expect = 7.1
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = -2

Query: 3       RVETCGGXQLNRMREVKAFVTQDIPLYHNLVMKHIPGADPELVLLNHYYEELDRIPLSEM 62
               R+ET         +E    + ++I L H ++++ +     +      Y+E L ++ L+++
Sbjct: 7377934 RLETLNYLIETFKKETNKSINKEIELSHEVLLQSL-----DSTCEIEYHERLFKLCLNDL 7377770

Query: 63      TRAEIN--KLLAEL 74
                R+EIN  +LL +L
Sbjct: 7377769 KRSEINIARLLGKL 7377728


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.323    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,084,878
Number of Sequences: 6
Number of extensions: 44033
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 125
length of query: 77
length of database: 11,314,357
effective HSP length: 52
effective length of query: 25
effective length of database: 11,314,045
effective search space: 282851125
effective search space used: 282851125
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)