TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= seed2.SELM_DANRE/29-105 (77 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325187621|emb|FR824191.1| Albugo laibachii Nc14, genomic cont... 27 2.3 gi|325189739|emb|FR824273.1| Albugo laibachii Nc14, genomic cont... 27 2.3 gi|325191078|emb|FR824350.1| Albugo laibachii Nc14, genomic cont... 27 3.0 gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic cont... 26 5.1 gi|325180061|emb|FR824049.1| Albugo laibachii Nc14, genomic cont... 25 8.7 gi|325181896|emb|FR824066.1| Albugo laibachii Nc14, genomic cont... 25 8.7 gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic cont... 25 8.7 >gi|325187621|emb|FR824191.1| Albugo laibachii Nc14, genomic contig CONTIG_146_NC14_v4_62822_155 Length = 62822 Score = 26.9 bits (58), Expect = 2.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 11 QLNRMREVKAFVTQDIPLYHNLVMKHIP 38 Q NR+ + + DIPLY++++ H P Sbjct: 27920 QYNRVNKSRLHAKCDIPLYNHIITHHAP 28003 >gi|325189739|emb|FR824273.1| Albugo laibachii Nc14, genomic contig CONTIG_228_NC14_v4_42414_133 Length = 42414 Score = 26.9 bits (58), Expect = 2.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 11 QLNRMREVKAFVTQDIPLYHNLVMKHIP 38 Q NR+ + + DIPLY++++ H P Sbjct: 12810 QYNRVNKSRLHAKCDIPLYNHIITHHAP 12727 >gi|325191078|emb|FR824350.1| Albugo laibachii Nc14, genomic contig CONTIG_305_NC14_v4_31206_237 Length = 31206 Score = 26.6 bits (57), Expect = 3.0 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = +2 Query: 12 LNRMREVKAFVTQDIPLYHNLVMKHIPGAD--PELVLLNHYYEELDRIPLSEMTRAEINK 69 ++R+ +++ + D+ ++ ++ + A + N YY ++ +P SEM + E+ Sbjct: 26087 IDRLHQMQGILLTDLNVHRVIITSVVVAAKFFDDHYYNNAYYAKVGGVPCSEMNQLEVEL 26266 Query: 70 LL 71 LL Sbjct: 26267 LL 26272 >gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic contig CONTIG_7_NC14_v4_241751_227 Length = 241751 Score = 25.8 bits (55), Expect = 5.1 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +2 Query: 27 PLYHNLVMKHIPGADPELVLLN--HYYEE 53 PLY++ ++ HIP P + + HYY E Sbjct: 152483 PLYNSAMLPHIPKLSPNMRFEDYYHYYSE 152569 >gi|325180061|emb|FR824049.1| Albugo laibachii Nc14, genomic contig CONTIG_4_NC14_v4_277804_239 Length = 277804 Score = 25.0 bits (53), Expect = 8.7 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 8/39 (20%) Frame = -1 Query: 25 DIPLYHNLVMK--------HIPGADPELVLLNHYYEELD 55 DIP YHN ++ HIP A L NH + L+ Sbjct: 209902 DIPFYHNKQLENEPKQTDSHIPDAFATLFTQNHLHNILE 209786 >gi|325181896|emb|FR824066.1| Albugo laibachii Nc14, genomic contig CONTIG_21_NC14_v4_184092_240 Length = 184092 Score = 25.0 bits (53), Expect = 8.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 19 KAFVTQDIPLYHNLVMKHIPGADPELVLLNHYY 51 + FVT++ YH LV + +PG +L N Y+ Sbjct: 136103 RRFVTEEA--YHLLVRRLVPGPGASRILTNLYH 136195 >gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic contig CONTIG_168_NC14_v4_55484_241 Length = 55484 Score = 25.0 bits (53), Expect = 8.7 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -1 Query: 28 LYHNLVMKHIPGADP 42 L+HNL++ H+PG P Sbjct: 50849 LFHNLILIHLPGEIP 50805 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.323 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,563,656 Number of Sequences: 3816 Number of extensions: 27227 Number of successful extensions: 102 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of query: 77 length of database: 10,913,379 effective HSP length: 52 effective length of query: 25 effective length of database: 10,714,947 effective search space: 267873675 effective search space used: 267873675 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (25.0 bits)