TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed12.Q8H6T5_CHLRE/24-103
         (80 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848471|gb|ADNL01002132.1| Astrammina rara contig02549, who...    21   5.6  
gi|330847750|gb|ADNL01002853.1| Astrammina rara contig00835, who...    21   7.3  
gi|330850445|gb|ADNL01000158.1| Astrammina rara contig00165, who...    21   7.3  

>gi|330848471|gb|ADNL01002132.1| Astrammina rara contig02549,
          whole genome shotgun sequence
          Length = 429

 Score = 21.2 bits (43), Expect = 5.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 2  GEFISCPGXR 11
          G+FI CPG R
Sbjct: 31 GKFIDCPGAR 2


>gi|330847750|gb|ADNL01002853.1| Astrammina rara contig00835,
          whole genome shotgun sequence
          Length = 376

 Score = 20.8 bits (42), Expect = 7.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 42 GRTPELVLYDENGVEIERMFVDK 64
          GRT ++  ++ +GVE + M + K
Sbjct: 62 GRTGKMFAFEHSGVEADLMTMAK 130


>gi|330850445|gb|ADNL01000158.1| Astrammina rara contig00165, whole
            genome shotgun sequence
          Length = 2425

 Score = 20.8 bits (42), Expect = 7.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 22   IRGDIEKDKAYENLTVNFV 40
            +RGD  + + Y+NL ++F+
Sbjct: 2065 LRGDYLQAQTYKNLALSFL 2009


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,758
Number of Sequences: 3231
Number of extensions: 851
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 483,365
effective HSP length: 45
effective length of query: 35
effective length of database: 337,970
effective search space: 11828950
effective search space used: 11828950
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)