TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed12.Q8H6T5_CHLRE/24-103
         (80 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181502|emb|FR824062.1| Albugo laibachii Nc14, genomic cont...    28   0.79 
gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic cont...    25   8.7  
gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic cont...    25   8.7  
gi|325191004|emb|FR824347.1| Albugo laibachii Nc14, genomic cont...    25   8.7  
gi|325195129|emb|FR825923.1| Albugo laibachii Nc14, genomic cont...    25   8.7  

>gi|325181502|emb|FR824062.1| Albugo laibachii Nc14, genomic contig
             CONTIG_17_NC14_v4_199494_229
          Length = 199494

 Score = 28.5 bits (62), Expect = 0.79
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 7     CPGXRLNHLPEVKKFIRGDIEKDKAYENLTV 37
             C   R  + PE++ F+ GD++ +  Y  LT+
Sbjct: 47314 CHSCRFENTPELRVFMHGDVKAEIVYYELTI 47406


>gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic contig
              CONTIG_7_NC14_v4_241751_227
          Length = 241751

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 62     VDKLKYDELHTLVQS 76
              +DKL YD++HT +++
Sbjct: 241634 IDKLNYDDVHTFIEA 241678


>gi|325184616|emb|FR824109.1| Albugo laibachii Nc14, genomic contig
            CONTIG_64_NC14_v4_99844_253
          Length = 99844

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 18   VKKFIRGDIEKDKAYENLTVNFVPGRTPELVLYDENGVEIERMFVDKLKY--DELHTLVQ 75
            V K +R    KDK YE     F  G     ++YD+      RM  DK+ Y  D   +LV 
Sbjct: 9933 VGKRVRVKWAKDKWYEGRVDRFNEGTYEHFIVYDDGDKRNYRM-SDKVFYIVDNEKSLVS 10109

Query: 76   S 76
            S
Sbjct: 10110S 10112


>gi|325191004|emb|FR824347.1| Albugo laibachii Nc14, genomic contig
             CONTIG_302_NC14_v4_31286_130
          Length = 31286

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 62    VDKLKYDELHTLVQS 76
             +DKL YD++HT +++
Sbjct: 22903 IDKLNYDDVHTFIEA 22947


>gi|325195129|emb|FR825923.1| Albugo laibachii Nc14, genomic contig
           CONTIG_2983_NC14_v4_501_201
          Length = 501

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 62  VDKLKYDELHTLVQS 76
           +DK+ YD++HT +Q+
Sbjct: 123 IDKVNYDDVHTFIQA 167


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,321,388
Number of Sequences: 3816
Number of extensions: 21900
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 80
length of database: 10,913,379
effective HSP length: 55
effective length of query: 25
effective length of database: 10,703,499
effective search space: 267587475
effective search space used: 267587475
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)