TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed10.Q7Q7W5_ANOGA/74-151
         (78 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849494|gb|ADNL01001109.1| Astrammina rara contig01302, who...    23   1.5  
gi|330850544|gb|ADNL01000059.1| Astrammina rara contig00062, who...    22   3.3  
gi|330849481|gb|ADNL01001122.1| Astrammina rara contig01317, who...    21   5.7  
gi|330848721|gb|ADNL01001882.1| Astrammina rara contig02237, who...    20   9.7  

>gi|330849494|gb|ADNL01001109.1| Astrammina rara contig01302, whole
           genome shotgun sequence
          Length = 476

 Score = 23.1 bits (48), Expect = 1.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 35  IKYVRGLDPIVKLMDEQGNVKETLSINKWNTDTVQEFFETRLAK 78
           +K +R + P ++++      K  L   KW   TVQE  + R  K
Sbjct: 199 LKPIRIMIPTLRVLTR----KTKLRFGKWKDYTVQELLDLRRQK 80


>gi|330850544|gb|ADNL01000059.1| Astrammina rara contig00062, whole
           genome shotgun sequence
          Length = 2381

 Score = 21.9 bits (45), Expect = 3.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 52  GNVKETLSINKWNTDT 67
           G ++ETL   KW+ DT
Sbjct: 848 GRLRETLQSAKWSYDT 801


>gi|330849481|gb|ADNL01001122.1| Astrammina rara contig01317, whole
           genome shotgun sequence
          Length = 352

 Score = 21.2 bits (43), Expect = 5.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 3   AVLEVCTCKFGAYPQIQ 19
           A   VC C F  +PQI+
Sbjct: 271 ATCNVCYCVFCTHPQIR 321


>gi|330848721|gb|ADNL01001882.1| Astrammina rara contig02237, whole
           genome shotgun sequence
          Length = 194

 Score = 20.4 bits (41), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 58  LSINKWNTDTVQEF 71
           +SI  W T+T+Q F
Sbjct: 104 ISITSWLTNTIQYF 145


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,875
Number of Sequences: 3231
Number of extensions: 1019
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 483,365
effective HSP length: 43
effective length of query: 35
effective length of database: 344,432
effective search space: 12055120
effective search space used: 12055120
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)