TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed1.SELM_MOUSE/39-115
         (77 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig4284  |  | 1 to 7498                                          28   0.78 
Lt_contig4741  |  | 1 to 5842                                          26   3.9  
Lt_contig20  |  | 1 to 17256                                           26   5.0  
Lt_contig4474  |  | 1 to 5276                                          25   6.6  
Lt_contig6411  |  | 1 to 19267                                         25   6.6  

>Lt_contig4284  |  | 1 to 7498
          Length = 7498

 Score = 28.5 bits (62), Expect = 0.78
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 4    VETCGGXQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERI 57
            V  CGG    +  +  A V+  ++ +  +   H+P A P L +L    Q+LER+
Sbjct: 7107 VSLCGGRPAAQRPQPAAQVSRQLRSHGQVHASHVPAAQPSLPVL----QDLERL 6958


>Lt_contig4741  |  | 1 to 5842
          Length = 5842

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 31   NLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINAL 70
            ++ M     +D  +VL++R Y +L R+P + +   E NAL
Sbjct: 2128 DVTMGATEASDDGIVLMARVYAQLSRLPSNVLDSIEKNAL 2247


>Lt_contig20  |  | 1 to 17256
          Length = 17256

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 24    EDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQM 62
             ++  L + L++  L G D  L+    NY  L ++PL Q+
Sbjct: 15160 DEPHLVYQLLVALLAGDDVPLLRCCHNYLRLRQLPLGQL 15276


>Lt_contig4474  |  | 1 to 5276
          Length = 5276

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 35   KHLPGADPELVLLSRNYQELER 56
            +HLPGA P L L SR  + ++R
Sbjct: 2878 RHLPGAVPVLTLASRCVRPMQR 2943


>Lt_contig6411  |  | 1 to 19267
          Length = 19267

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 18   VKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQEL 54
            V  FV EDI L+  ++    PG    +    R YQEL
Sbjct: 4748 VPKFVAEDIPLFRGIMQDLFPG----VTFPEREYQEL 4650


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.320    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,377,460
Number of Sequences: 7267
Number of extensions: 21482
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of query: 77
length of database: 10,532,946
effective HSP length: 51
effective length of query: 26
effective length of database: 10,162,329
effective search space: 264220554
effective search space used: 264220554
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)