TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed1.SELM_MOUSE/39-115
         (77 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_28                                                              26   5.2  
contig_18                                                              25   6.7  

>contig_28
          Length = 1171725

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 18      VKAFVTEDIQLYHNLVMKHLPGAD-PELVLLSRNYQEL 54
               V  FV EDI L+  ++    PG   PE     R YQEL
Sbjct: 1123729 VPKFVAEDIPLFRGIMQDLFPGVSFPE-----REYQEL 1123631


>contig_18
          Length = 735640

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 7      CGGXQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNY 51
              CG     R  E  A V  D+QL    V+ H+   D   V  + N+
Sbjct: 542109 CGAIATGR*DEADAHVLVDLQLLEEDVIPHVCHLDGAFVTFTHNH 541975


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.320    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,419,034
Number of Sequences: 36
Number of extensions: 21724
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 16
length of query: 77
length of database: 10,814,999
effective HSP length: 52
effective length of query: 25
effective length of database: 10,813,127
effective search space: 270328175
effective search space used: 270328175
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)