TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed1.SELM_MOUSE/39-115
         (77 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241722|gb|AFNH01002304.1| Gregarina niphandrodes asmbl.305...    24   9.3  
gi|338242544|gb|AFNH01001893.1| Gregarina niphandrodes asmbl.267...    24   9.3  

>gi|338241722|gb|AFNH01002304.1| Gregarina niphandrodes asmbl.3051,
            whole genome shotgun sequence
          Length = 18857

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 4    VETCGGXQLNRLKEVKAFVTEDIQLYH--NLVMKHLPGADPELVLLSRNYQELERIPLSQ 61
            +  C    LN  + ++   T+ ++ +   +L  ++  G    L  +++NY +L    L+ 
Sbjct: 7217 IPECATQWLNVPRVMEPLATKLVEFFERRDLAWENYTGVAKLLTAVAKNYDDLRTFKLAF 7396

Query: 62   MTRDEINALVQELGF 76
            +     N +  ELG+
Sbjct: 7397 IHGSNDNLVKPELGW 7441


>gi|338242544|gb|AFNH01001893.1| Gregarina niphandrodes asmbl.2678,
            whole genome shotgun sequence
          Length = 10832

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 6/18 (33%), Positives = 16/18 (88%)
 Frame = +2

Query: 59   LSQMTRDEINALVQELGF 76
            L +++RD+++ +++E+GF
Sbjct: 9461 LDELSRDQLSQMIEEIGF 9514


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.320    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,200,399
Number of Sequences: 3680
Number of extensions: 12178
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 77
length of database: 5,120,956
effective HSP length: 51
effective length of query: 26
effective length of database: 4,933,276
effective search space: 128265176
effective search space used: 128265176
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)