TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed1.SELM_MOUSE/39-115
         (77 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced ...    29   0.45 
gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ...    27   2.9  
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    27   2.9  
gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ...    26   3.8  

>gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-o-33e01.r1-3, whole genome shotgun
              sequence
          Length = 1429294

 Score = 29.3 bits (64), Expect = 0.45
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 16     KEVKAFVTEDIQL--YHNLVMKHLPGADPELVLLSRNYQEL 54
              KE + F  E+ QL  Y  LV+  L G+D  L+++ RNY  L
Sbjct: 973853 KEYQTF-KENFQLANYRELVISALTGSDNNLIVVQRNYNRL 973972


>gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence
          Length = 1919465

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 33      VMKHLPGADPELVLLSRNYQELERIPLSQMTRD 65
               V++H    D   +++ R YQ+++R PLS +  D
Sbjct: 1650223 VVRHTYTQDTNTIIMKRVYQDIDRQPLSFVDDD 1650125



 Score = 25.4 bits (54), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 36      HLPGADPELVLLSRNYQELERIPLS 60
               H    D   +++ R YQE++R PLS
Sbjct: 1646930 HTQTQDTNTIIMKRVYQEIDRQPLS 1646856


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 4       VETCGGXQLNRLKEVKAFVTEDIQLYHNLVMKHL 37
               ++TC   + N LK    F  + I LYH +   HL
Sbjct: 1996372 IQTCTTNKHNNLKRYVTFNVQIITLYHRINPSHL 1996271


>gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun
              sequence
          Length = 1327167

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 3      RVETCGGXQLNRLKEVKAFVTEDIQLYHNLVMKH 36
              RVE  GG  L     ++ +V + ++   NLV+KH
Sbjct: 991205 RVERVGGDVLGHSVGIQGWVVDRVE*VSNLVLKH 991104


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.320    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,093,130
Number of Sequences: 25
Number of extensions: 20939
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 26
length of query: 77
length of database: 10,339,736
effective HSP length: 52
effective length of query: 25
effective length of database: 10,338,436
effective search space: 258460900
effective search space used: 258460900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)