TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed1.SELM_MOUSE/39-115
         (77 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, who...    24   0.68 
gi|330848000|gb|ADNL01002603.1| Astrammina rara contig03080, who...    23   2.0  
gi|330850572|gb|ADNL01000031.1| Astrammina rara contig00032, who...    22   2.6  
gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, who...    22   4.4  
gi|330848940|gb|ADNL01001663.1| Astrammina rara contig01974, who...    20   9.8  

>gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, whole
           genome shotgun sequence
          Length = 1448

 Score = 24.3 bits (51), Expect = 0.68
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 24  EDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTR 64
           E +  YH L ++ L   +  LVL+ R+    + +P S + R
Sbjct: 349 EKLHGYHTLHLRRLGQVELSLVLVVRHISAAQPVPQSTIPR 227


>gi|330848000|gb|ADNL01002603.1| Astrammina rara contig03080, whole
            genome shotgun sequence
          Length = 8271

 Score = 22.7 bits (47), Expect = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 33   VMKHLPGADPELVLLSRNYQELER 56
            V KH PGA   ++   RNY+  E+
Sbjct: 6507 VEKHFPGAQESILDWFRNYKVREQ 6578


>gi|330850572|gb|ADNL01000031.1| Astrammina rara contig00032, whole
            genome shotgun sequence
          Length = 3405

 Score = 22.3 bits (46), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 26   IQLYHNLVMKHLPGADPELVLLSR 49
            I+LY    +K+ P A PEL+ L +
Sbjct: 1956 IELYSG*YIKYQPFAQPELLSLKK 2027


>gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, whole
           genome shotgun sequence
          Length = 718

 Score = 21.6 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 28  LYHNLVMKHLPGADPEL 44
           L+H +  + LPGA P L
Sbjct: 706 LFHKVSKRFLPGAPPPL 656


>gi|330848940|gb|ADNL01001663.1| Astrammina rara contig01974,
          whole genome shotgun sequence
          Length = 170

 Score = 20.4 bits (41), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 18 VKAFVTEDIQLYHNLVMKHLP 38
          + A  T  + L+H LV +H+P
Sbjct: 50 ILALGTRCLLLFHALVTQHVP 112


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,487
Number of Sequences: 3231
Number of extensions: 886
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 77
length of database: 483,365
effective HSP length: 42
effective length of query: 35
effective length of database: 347,663
effective search space: 12168205
effective search space used: 12168205
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)