TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed1.SELM_MOUSE/39-115
         (77 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic cont...    26   3.9  
gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic cont...    26   5.1  

>gi|325185424|emb|FR824127.1| Albugo laibachii Nc14, genomic contig
             CONTIG_82_NC14_v4_91335_233
          Length = 91335

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 3     RVETCGGXQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNY 51
             R + C   +LNR  E++     +I + H+LV      A  + V+ +RN+
Sbjct: 23812 RNKVCWSRRLNRPDEIEPLTDSNIGINHHLVAVSKRRAIAQCVVSNRNW 23666


>gi|325188241|emb|FR824213.1| Albugo laibachii Nc14, genomic contig
             CONTIG_168_NC14_v4_55484_241
          Length = 55484

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 28    LYHNLVMKHLPGADP 42
             L+HNL++ HLPG  P
Sbjct: 50849 LFHNLILIHLPGEIP 50805


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.320    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,345,214
Number of Sequences: 3816
Number of extensions: 22900
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 77
length of database: 10,913,379
effective HSP length: 52
effective length of query: 25
effective length of database: 10,714,947
effective search space: 267873675
effective search space used: 267873675
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)