T-COFFEE, Version_8.99(Fri Feb 18 08:27:45 CET 2011 - Revision 596)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
PHYCAscaffold_8   :  99
PHYCAscaffold_8   :  99
PHYCAscaffold_8   :  99
PHYCAscaffold_8   :  99
PHYCAscaffold_8   :  99
PHYCAscaffold_8   :  99
PHYCAscaffold_8   :  99
cons              :  99

PHYCAscaffold_8   ----AEETNYDYDLVVIGGGSGGLACSKEAASF
PHYCAscaffold_8   --------NYDYDLVVIGGGSGGLACSKEAASF
PHYCAscaffold_8   --------NYDYDLVVIGGGSGGLACSKEAASF
PHYCAscaffold_8   -----EETNYDYDLVVIGGGSGGLACSKEAASF
PHYCAscaffold_8   STADAEETNYDYDLVVIGGGSGGLACSKEAASF
PHYCAscaffold_8   -----EETNYDYDLVVIGGGSGGLACSKEAASF
PHYCAscaffold_8   --------NYDYDLVVIGGGSGGLACSKEAASF

cons                      *************************


PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK
PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK
PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK
PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK
PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK
PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK
PHYCAscaffold_8   GQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPK

cons              *********************************


PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPT
PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPT
PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPT
PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPT
PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPT
PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPT
PHYCAscaffold_8   KLMHQSSLIGEVIHHDGANFGWT----------

cons              **********************.          


PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE
PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE
PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE
PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE
PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE
PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE
PHYCAscaffold_8   FNWKQLVSNVDGYIKSINFKYKVELRSKYVKYE

cons              *********************************


PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV
PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV
PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV
PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV
PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV
PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV
PHYCAscaffold_8   NFLGSFVNPHTLELWHPRKGTKQITTRDVVIAV

cons              *********************************


PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL
PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL
PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL
PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL
PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL
PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL
PHYCAscaffold_8   GGRPKELTCPGGEHAISSDDIFWMKKKEPGKTL

cons              *********************************


PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG
PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG
PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG
PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG
PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG
PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG
PHYCAscaffold_8   VVGASYVALECAGFLKGMGYDVKVMVRSILLRG

cons              *********************************


PHYCAscaffold_8   FDQDMADKIGEYMEVQSGIEFIRKTVPQSITKL
PHYCAscaffold_8   FDQDMADKIGEYME-------------------
PHYCAscaffold_8   FDQDMADKIGEYMEVQSGIEFIRKTVPQSITKL
PHYCAscaffold_8   FDQDMADKIGEYMEVQSGIEFIRKTVPQSITKL
PHYCAscaffold_8   FDQDMADKIGEYMEVQSGIEFIRKTVPQSITKL
PHYCAscaffold_8   FDQDMADKIGEYMEVQSGIEFIRKTVPQSITKL
PHYCAscaffold_8   FDQDMADKIGEYMEVQSGIEFIRKTV-------

cons              **************                   


PHYCAscaffold_8   ENGQLLVKWTSEDGESCEEAFDTVLNATGRDPD
PHYCAscaffold_8   ---------------SCEEAFDTVLNATGRDPD
PHYCAscaffold_8   ENGQLLVKWTSEDGESCEEAFDTVLNATGRDPD
PHYCAscaffold_8   ENGQLLVKWTSEDGESCEEAFDTVLNATGRDPD
PHYCAscaffold_8   ENGQLLVKWTSEDGESCEEAFDTVLNATGRDPD
PHYCAscaffold_8   ENGQLLVKWTSEDGESCEEAFDTVLNATGRDPD
PHYCAscaffold_8   -------KWTSEDGESCEEAFDTVLNATGRDPD

cons                             ******************


PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY
PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY
PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY
PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY
PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY
PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY
PHYCAscaffold_8   VAKLNLDKAGVKLNEKSGRIWVKNEQTSTPNIY

cons              *********************************


PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ
PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ
PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ
PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ
PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ
PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ
PHYCAscaffold_8   AIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQ

cons              *********************************


PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMSEEDSKERFGED
PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMSEEDSKERFGED
PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMSEEDSKERFGED
PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMSEEDSKERFGED
PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMS-----------
PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMSEEDSKERFGED
PHYCAscaffold_8   MDYEKVCTAVFTPIEYGCCGMSEEDSKERFGED

cons              **********************           


PHYCAscaffold_8   NIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC
PHYCAscaffold_8   NIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC
PHYCAscaffold_8   NIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC
PHYCAscaffold_8   NIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC
PHYCAscaffold_8   -----------------------AESCYLKVIC
PHYCAscaffold_8   NIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC
PHYCAscaffold_8   NIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC

cons                                     **********


PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF
PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF
PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF
PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF
PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF
PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF
PHYCAscaffold_8   DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF

cons              *********************************


PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATT
PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKS------
PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATT
PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATT
PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATT
PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATT
PHYCAscaffold_8   TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATT

cons              ***************************      


PHYCAscaffold_8   GGGCXG
PHYCAscaffold_8   ----SG
PHYCAscaffold_8   GGGCXG
PHYCAscaffold_8   GGGCXG
PHYCAscaffold_8   GGGCXG
PHYCAscaffold_8   GGGCXG
PHYCAscaffold_8   GGGCXG

cons                   *