genewise output Score 21.75 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|288565202|gb 277 LPAAGVGLNPKTGRIAVTHEQTSAPH L G GLN +T +A T QT+APH LATGGGGLNRRT--VAFTFPQTAAPH PHYCAscaffold_817936 cgaggggcacaa ggtatccaggcc tccggggtaggc tctctcacccca ggtatcggtggt ggcgtagtagac // >PHYCAscaffold_84:subseq(86261,21487).pep LATGGGGLNRRTVAFTFPQTAAPH // >PHYCAscaffold_84:subseq(86261,21487).[17936:18007].sp CTGGCGACTGGAGGTGGCGGGCTGAATCGGAGGACTGTGGCGTTCACGTTTCCACAGACT GCAGCGCCACAC // PHYCAscaffold_84:subseq(86261,21487) GeneWise match 17936 18007 22.75 + . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 17936 18007 0.00 + 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 // genewise output Score 727.62 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|288565202|gb 2 YDWDLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTC YD+DLVVIGGGSGGLA SKEAA +GQKV VLDYVKPSPQG++WGLGGTC YDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTC PHYCAscaffold_-11475 tgtgcggagggtggcgttagggttgcagtgcgtgactccgattgcggat aaaattttgggcggtcgcaaccctgaatgttaatacccagccggtggcg ccctaggtccatacgcccgagctctggctaacccgggtgcgtgtagcgt gi|288565202|gb 51 VNVGCIPKKLMHQSAIMGELLHKDAEAFGWAVPNA-----TFDWTKLVT VNVGCIPKKLMHQS+++GE++H D FGW + + TF+W +LV+ VNVGCIPKKLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPTFNWKQLVS PHYCAscaffold_-11328 gaggtacaacaccatcagggaccgggatgtacttgggagcatatactgt tatggtcaattaagcttgattaaagcatggatccgagaccctagaattc ctcccccggcgcactatcgccctcctctcgttgtgtactattcgggggg gi|288565202|gb 95 SVQDYIHGLNFKYRVDLRDKKVKYENFLGTFKDAHTLTLTNPAKGKPPK +V YI +NFKY+V+LR K VKYENFLG+F + HTL L +P KG K NVDGYIKSINFKYKVELRSKYVKYENFLGSFVNPHTLELWHPRKG--TK PHYCAscaffold_-11181 agggtaaaaatataggccaatgatgatcgttgaccatgttcccag aa atagatagtataaatatggaataaaattgcttacactatgacgag ca cgcgccaccccgcgggactgctgcgccgctctcccaggggctcgc ag gi|288565202|gb 144 DVTFRRALIAVGGRPKSLDCPGADLAISSDDIF-SRPTPPGKTLVVGAS +T R +IAVGGRPK L CPG + AISSDDIF + PGKTLVVGAS QITTRDVVIAVGGRPKELTCPGGEHAISSDDIFWMKKKEPGKTLVVGAS PHYCAscaffold_-11040 caaacgggaggggccagtatcgggcgataggattaaaagcgaacggggt atccgatttctgggcaatcgcggaactcgaattgtaaaacgactttgcc gctattgctttttacgggctatagtgtgtcttcgggaggacgttgtccg gi|288565202|gb 192 YVALECAGFLKAQGFDVTVMVRSILLRGFDTDMAARIGTYMEEEAKIDF YVALECAGFLK G+DV VMVRSILLRGFD DMA +IG YME ++ I+F YVALECAGFLKGMGYDVKVMVRSILLRGFDQDMADKIGEYMEVQSGIEF PHYCAscaffold_-10893 tggcgtggtcagagtggagagctatccgtgcgaggaaggtaggctgagt atctagcgttagtgaatatttgctttggtaaatcaatgaatatacgtat cgcggtaccggcgcctggggcactgttcccgcgccgtcgcggggattgc gi|288565202|gb 241 IKGAVPTSIEQLANG--------------EGIYDTVLNATGRNPDVSGL I+ VP SI +L NG E +DTVLNATGR+PDV+ L IRKTVPQSITKLENGQLLVKWTSEDGESCEEAFDTVLNATGRDPDVAKL PHYCAscaffold_-10746 acaagcctaaacgagcccgataaggggatgggtgagcagagcgcgggac tgactcactcataagatttagcgaagaggaactacttaccggacatcat tggaaggccgacgctgcgaggacacagttgatcttgtcttcttttgggg gi|288565202|gb 276 NLPAAGVGLNPKTGRIAVTHEQTSAPHIYAVGDVIDGPELTPVAIQAGR NL AGV LN K+GRI V +EQTS P+IYA+GDVID PELTPVAIQAGR NLDKAGVKLNEKSGRIWVKNEQTSTPNIYAIGDVIDAPELTPVAIQAGR PHYCAscaffold_-10599 acgagggacagatgcatgaagcatacaatgagggaggcgcacggacggc ataacgtataaacggtgtaaaaccccatactgattaccatcctctacgg cgcgtagggtggtaccgggcgggggcctccttttccgaacgtcctgtaa gi|288565202|gb 325 LLAKRLFDNSATLMAYDKVCTAVFTPIEYGCCGLSEDAAIETIGADNLG LL++RL++NS M Y+KVCTAVFTPIEYGCCG+SE+ + E +G DN+ LLSRRLYNNSTVQMDYEKVCTAVFTPIEYGCCGMSEEDSKERFGEDNIE PHYCAscaffold_-10452 tctccttaatagcagtgagtaggtacagtgttgatgggaagctgggaag ttcggtaaacctataaaatgccttcctaaggggtcaaagaagtgaaata gtgttgctcgggggccgggcaagtttcgcgctcggggccagctagcccg gi|288565202|gb 374 VYHQSFTPLEWSLSHD-RALAKECYCKLIVDRTQNDRVVGFHYLGPNAG VYH +F PLEWSLS D R A+ CY K+I D+T++ VVGFHYLGPNAG VYHTNFVPLEWSLSTDTRTAAESCYLKVICDKTRDKFVVGFHYLGPNAG PHYCAscaffold_-10305 gtcaatgccgttttagacagggttttagatgaacgatgggtctcgcagg taacattctagctccacgcccacgatattgaacgaatttgtaatgcacg tccgctgggggggggcgcaaaggtcgggctcagttgcggcctctagttc gi|288565202|gb 422 EVTQAVGIAMKLNASYDDFVSTVGIHPTTAEIFTTLEITKESGLDASAA EVTQA+G+AMKL +YD +V TVGIHPTTAE FTTLE+TK SG + EVTQAMGLAMKLGFTYDQMVDTVGIHPTTAESFTTLEVTKSSGGATTGG PHYCAscaffold_-10158 ggacgagtgaatgtatgcaggaggaccaaggttaacggaaaagggaagg atcactgtctatgtcaaattactgtaccccactcctatcaggggcccgg ggtacgggcgggccgccagttccctcgggcggcgtgggggcttagctcg gi|288565202|gb 471 GC GC GC PHYCAscaffold_-10011 gt gg tc // >PHYCAscaffold_84:subseq(86261,21487).pep YDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKLM HQSSLIGEVIHHDGANFGWNLSSGDGNAPTFNWKQLVSNVDGYIKSINFKYKVELRSKYV KYENFLGSFVNPHTLELWHPRKGTKQITTRDVVIAVGGRPKELTCPGGEHAISSDDIFWM KKKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMADKIGEYMEVQSG IEFIRKTVPQSITKLENGQLLVKWTSEDGESCEEAFDTVLNATGRDPDVAKLNLDKAGVK LNEKSGRIWVKNEQTSTPNIYAIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQMDYEKV CTAVFTPIEYGCCGMSEEDSKERFGEDNIEVYHTNFVPLEWSLSTDTRTAAESCYLKVIC DKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIHPTTAESFTTLEVTKS SGGATTGGGC // >PHYCAscaffold_84:subseq(86261,21487).[11475:10004].sp TACGACTACGATCTAGTGGTGATTGGCGGCGGATCTGGAGGCCTGGCCTGCTCCAAGGAA GCGGCCTCTTTCGGTCAGAAGGTCTGTGTACTAGACTACGTCAAGCCGTCGCCTCAGGGC ACGTCTTGGGGTCTAGGGGGCACGTGTGTCAATGTCGGCTGCATCCCCAAGAAGCTCATG CACCAAAGCTCTCTAATTGGCGAGGTCATCCACCATGACGGCGCTAACTTTGGCTGGAAT CTTTCGTCTGGGGATGGAAACGCTCCAACTTTTAACTGGAAGCAGTTGGTGTCGAACGTG GACGGGTACATCAAAAGCATCAACTTCAAGTACAAGGTGGAGCTACGCAGTAAGTACGTT AAGTACGAGAACTTCCTGGGCTCTTTCGTTAACCCCCACACATTGGAGTTGTGGCACCCT CGCAAGGGCACAAAGCAGATCACTACACGTGATGTGGTCATTGCTGTTGGTGGTCGACCC AAGGAGTTGACCTGTCCAGGTGGAGAGCATGCGATTTCGAGTGACGATATTTTCTGGATG AAGAAAAAGGAGCCAGGCAAGACTCTTGTGGTTGGCGCCTCGTACGTGGCCCTGGAGTGT GCAGGCTTCCTGAAGGGCATGGGCTACGATGTGAAGGTGATGGTCCGATCCATTTTGCTT CGTGGCTTCGACCAGGACATGGCCGACAAGATTGGCGAGTACATGGAGGTGCAGTCAGGT ATTGAGTTCATTCGGAAGACAGTACCGCAGTCCATCACGAAACTCGAGAACGGTCAGCTC CTGGTAAAGTGGACAAGCGAAGACGGAGAGAGTTGTGAGGAAGCTTTCGATACTGTGCTT AACGCTACTGGCCGTGATCCTGATGTGGCGAAGCTGAACCTGGACAAGGCTGGAGTGAAG CTGAATGAGAAGTCTGGACGCATCTGGGTGAAGAACGAGCAGACGTCGACGCCCAACATT TACGCCATTGGTGATGTTATCGACGCGCCAGAACTCACGCCTGTCGCCATTCAGGCTGGA CGATTGCTTTCGCGTCGTTTGTACAATAACTCGACGGTGCAGATGGACTACGAGAAGGTG TGCACAGCAGTGTTTACTCCTATCGAGTACGGGTGCTGTGGCATGTCGGAGGAGGACAGC AAAGAGCGCTTTGGAGAGGACAACATCGAGGTTTACCACACGAACTTTGTGCCGCTGGAG TGGTCGTTGTCGACGGACACGCGCACAGCAGCAGAGTCGTGTTACTTGAAGGTGATCTGT GACAAAACGCGTGATAAGTTCGTGGTGGGCTTCCATTACCTTGGACCGAATGCTGGCGAG GTGACTCAAGCCATGGGGTTGGCCATGAAGTTGGGCTTCACGTACGACCAAATGGTTGAT ACCGTCGGCATTCACCCGACGACGGCCGAGTCGTTCACGACTCTGGAGGTGACGAAGAGC AGTGGTGGAGCGACCACTGGCGGGGGTTGC // PHYCAscaffold_84:subseq(86261,21487) GeneWise match 11475 10006 745.59 - . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 11475 10006 0.00 - 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 //