genewise output Score 381.11 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|288565202|gb 5 DLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTCVNV DLVVIGGGSGGLAA+KEAA+ G KV+ DYV+PSPQGS WGLGGTCVNV DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNV gi|338242564|gb 9967 gtggagggaggtgggagggacggaggttgtggctccgtatgcggatgag attttggggggtcccaaccgtgcattgtaatacccagcaggtggcgtat tgggtccgtccggagggggggtcgcgttctgggaggtcggtgcggtgct gi|288565202|gb 54 GCIPKKLMHQSAIMGELLHKDAEAFGWA-VPNATFDWTKLVTSVQDYIH GCIPK +MH SA +G+L+ A +GW+ TF W LV +VQ YI GCIPKIIMHNSAKLGQLMDHSAAPLGWSGTDGLTFVWQDLVKTVQLYIK gi|338242564|gb10114 gtacaaaacatgatgctagctggccgtagaggcatgtcgcgaagcctaa ggtcatttaaccatgattaacccctggggcagtcttgaattactatata tctggccgccgcggaaggctagcatcgtttctgaccggcgaggtatccg gi|288565202|gb 102 GLNFKYRVDLRDKKVKYENFLGTFKDAHTLTLTNPAKGK--------PP LNF YR LR V+Y N T+ A + G+ QLNFSYRRGLRSAGVEYINAKATLLAAPERAQSGAKSGRVVEYTLKGER gi|338242564|gb10261 ccatttccgccaggggtaagagaccggcgagctggatgcgggtacaggc atatcagggtggcgtaatacaccttcccagcacgcacggttaactagag atccacatctccctagttctatacccccgacggccgttagggtacgcgg gi|288565202|gb 143 KDVTFRRALIAVGGRPK-SLDCPGA-DLAISSDDIFSRPTPPGKTLVVG K+V + L+AVGGRP D PGA LA++SDD+FS P KTLVVG KEVRAKCVLVAVGGRPYIPRDVPGAVELAVTSDDLFSLSREPKKTLVVG gi|338242564|gb10408 aggcgatgtgggggcctaccggcggggtggaaggttattcgcaaatggg aatgcagtttctgggcatcgatcgctatctcgaattgtcgacaactttg ggggggttgacgtaggctagctctgtggcggttcgttagcggggtgggt gi|288565202|gb 190 ASYVALECAGFLKAQGFDVTVMVRSILLRGFDT ASY+ALECAGFL +DVTV VRSI+LRGFD ASYIALECAGFLTHLRYDVTVCVRSIVLRGFDR gi|338242564|gb10555 gttagcgtggtcaccctggagtgctagccgtgc ccatctagcgttcatgaatctgtgctttggtag ggctaagcggcgacgtttacgtaccagtctcca gi|288565202|gb 223 DMAARIGTYMEEEAKIDFIKGAV D+A G D G -:H[cac] DLAGDRGADTTSNTTAD---GGD gi|338242564|gb10654 CAGTGTGCG Intron 1 TAGCgcgggcgggaataaagg ggg <2-----[10656:10763]-2> atcgaggcacccaccca gga cacactggtggctgccc tcc gi|288565202|gb 246 PTSIEQLANGEGIYDTVLNATGRNPDVSGLNLPAAGVGLNPKTGRIAVT + + E ++DTV+ A GR L AAG+ ++P +G+I V KILVRFASGREEMFDTVVYAVGRRACTQSLGCEAAGIAMHPASGKIVVD gi|338242564|gb10825 aacgctgtgcggatgaggtgggccgtacacgtggggagaccgtgaaggg atttgtccggaattacttactgggcgcagtggaccgtctacccgattta gcccgcacacaagccagccccgccaccatcccgcccccgccatcgtgcc gi|288565202|gb 295 H-EQTSAPHIYAVGDVIDG-PELTPVAIQAGRLLAKRLFDNSATLMAYD EQTSAP +YA+GDV G PELTPVAI+AG LLA+RLF + M Y ELEQTSAPGVYAIGDVCHGRPELTPVAIKAGELLARRLFGGANEPMVYT gi|338242564|gb10972 gcgcatgcggtgagggtcgccgcacggaagggtcgacctgggagcagta ataaccccgtactgatgaggcatcctctacgattcggttggcaacttac gagatcactccctacctcccgaatctccgccagccgcctacccacgtca gi|288565202|gb 342 KVCTAVFTPIEYGCCGLSEDAAIETIGADNLGVYHQSFTPLEWSLSH-D + T VFTPIEYGCCGLSE+ AI G DN+ V+ F + S H NIPTVVFTPIEYGCCGLSEEDAITRYGQDNIEVFLFGFNSVPVSACHWK gi|338242564|gb11119 aacaggtacagtgttgctggggaaatgcgaaggtctgtatgcgtgtcta atcctttcctaaggggtcaaactcgagaaatattttgtactctccgaga tacgtcccaaatcccattaatccgactactcggcccccctgctcttcga gi|288565202|gb 390 RALA--KECY--------CKLIVDRTQNDRVVGFHYLGPN +AL+ K+ + I+ + ++++VG+H + N KALSTRKDEFDLDVTPLNLSKIICKKPDNKIVGYHCIAMN gi|338242564|gb11266 agctacaggtgcggaccacaaaataacgaaaggtctagaa actccgaaatatatcctatgattgaacaaattgaagtcta gacaccacatcgtcccttccacccgatccactctccccgc gi|288565202|gb 420 AGEVTQAVGIAMKLNASYDDFVSTVG AGE TQ +A+K + DD+ + VG AGETTQGYALALKCGLTKDDLDAVVG gi|338242564|gb11386 GTAAGCG Intron 2 TAGgggaacgtgtgcatgtaaggtggggg <0-----[11386:11508]-0>cgaccagactctaggtcaaatacttg tagaggtcgggggtggcgctgcacgt gi|288565202|gb 446 IHPTTAEIFTTLEITKESGLDASAAG-CXG IHPT AE F ++ IT+ SG AAG C G IHPTDAESFHSMTITRRSGESFMAAGGCGG gi|338242564|gb11587 accagggttctaaaaccaggataggggtgg taccacactactctcggggagttccggggg ccgtcaggccaggcttcccatcgtttcctt // Making a H in phase 2 intron >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).pep DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNVGCIPKIIMHNS AKLGQLMDHSAAPLGWSGTDGLTFVWQDLVKTVQLYIKQLNFSYRRGLRSAGVEYINAKA TLLAAPERAQSGAKSGRVVEYTLKGERKEVRAKCVLVAVGGRPYIPRDVPGAVELAVTSD DLFSLSREPKKTLVVGASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRHDLAGDRGADT TSNTTADGGDKILVRFASGREEMFDTVVYAVGRRACTQSLGCEAAGIAMHPASGKIVVDE LEQTSAPGVYAIGDVCHGRPELTPVAIKAGELLARRLFGGANEPMVYTNIPTVVFTPIEY GCCGLSEEDAITRYGQDNIEVFLFGFNSVPVSACHWKKALSTRKDEFDLDVTPLNLSKII CKKPDNKIVGYHCIAMNAGETTQGYALALKCGLTKDDLDAVVGIHPTDAESFHSMTITRR SGESFMAAGGCGG // >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).[9967:11676].sp GATTTGGTGGTGATTGGCGGCGGGAGTGGCGGCTTGGCGGCAGCGAAGGAGGCGGCGAGG CTGGGTGCCAAGGTCGTGTGTTTTGACTATGTGGAGCCGTCACCGCAGGGTTCCAAGTGG GGTCTGGGCGGGACGTGTGTGAACGTTGGTTGCATTCCGAAGATCATCATGCACAACTCG GCCAAGTTGGGACAATTGATGGACCATTCAGCGGCCCCACTTGGCTGGAGTGGTACTGAC GGTCTGACATTCGTCTGGCAGGACCTGGTAAAGACGGTTCAACTTTACATCAAGCAACTT AACTTCTCATACCGACGTGGCCTTCGCAGCGCCGGTGTAGAGTATATTAACGCTAAAGCT ACACTCCTCGCCGCCCCCGAGAGAGCCCAGTCGGGCGCCAAGTCTGGTCGAGTGGTGGAG TATACACTCAAGGGCGAGCGGAAGGAGGTGCGGGCGAAGTGTGTTTTGGTAGCCGTGGGT GGACGGCCGTACATTCCACGGGACGTTCCCGGTGCGGTTGAGTTGGCCGTGACGAGTGAT GACTTGTTTAGTTTATCGCGCGAGCCGAAGAAGACTTTGGTGGTGGGTGCGTCGTACATT GCACTAGAGTGCGCGGGGTTCCTGACACACCTGCGTTATGATGTAACCGTGTGTGTACGC TCCATAGTGCTTCGCGGTTTCGACCGACACGACCTAGCCGGAGACCGTGGGGCGGATACG ACGTCCAATACGACCGCCGACGGTGGCGACAAGATCCTCGTCCGGTTCGCATCCGGACGC GAAGAAATGTTCGACACAGTGGTCTACGCCGTCGGGCGCCGCGCATGCACCCAAAGTCTC GGCTGCGAGGCCGCCGGCATCGCCATGCACCCCGCATCTGGCAAGATTGTGGTCGACGAG CTAGAGCAAACTTCCGCACCCGGTGTCTACGCCATTGGAGACGTCTGTCACGGCCGCCCG GAACTAACTCCCGTTGCCATCAAGGCCGGCGAATTGCTCGCCAGGCGCCTCTTTGGAGGC GCCAACGAACCCATGGTTTACACAAATATACCCACGGTTGTCTTCACCCCAATAGAATAT GGCTGCTGCGGACTTTCTGAAGAAGATGCCATCACGAGATACGGTCAAGACAATATCGAG GTGTTCCTCTTCGGCTTCAACTCTGTGCCCGTTTCCGCTTGTCACTGGAAAAAGGCACTC TCAACCCGCAAAGACGAATTTGACCTGGATGTCACCCCCCTTAATCTCAGCAAAATCATC TGCAAGAAACCTGACAACAAAATCGTTGGCTATCACTGCATCGCCATGAACGCTGGAGAG ACAACGCAGGGTTACGCGTTGGCGCTGAAGTGTGGGTTGACCAAGGACGATTTGGACGCA GTCGTGGGTATCCACCCGACTGACGCAGAGTCGTTCCACTCAATGACGATCACTCGTCGC AGCGGCGAAAGTTTCATGGCTGCTGGTGGCTGCGGTGGT // gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise match 9967 11676 398.09 + . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 9967 10655 0.00 + 0 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise intron 10656 10763 0.00 + . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 10764 11385 0.00 + 1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise intron 11386 11508 0.00 + . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 11509 11676 0.00 + 0 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 // genewise output Score 16.49 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|288565202|gb 80 WAVPNATFDWTKLVTSV W V +AT D +++V+ + WTVKSATCDVSRVVSDI gi|338242564|gb-2100 tagatgatggtcggtga gctacccgatcgttcat ggcggagtcgcgctctt // >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).pep WTVKSATCDVSRVVSDI // >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).[2100:2048].sp TGGACGGTCAAGTCGGCAACGTGTGACGTGTCCCGGGTCGTTTCCGATATT // gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise match 2100 2050 16.49 - . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 2100 2050 0.00 - 0 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 //