genewise output Score 505.51 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|288565202|gb 6 LVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTCVNVG LVVIGGGSGG+AA+KEAA G KV + D+VKPSP+G+TWGLGGTCVNVG LVVIGGGSGGMAAAKEAALLGAKVALCDFVKPSPEGTTWGLGGTCVNVG scaffold_7:subs 8573 cggagggaggagggagggccggaggctgtgactcggaatgcggatgagg ttttggggggtcccaaccttgcatctgattacccagccggtggcgtatg ttatttttaagtttaaagtggcagaattctgtaggatagagaactctat gi|288565202|gb 55 CIPKKLMHQSAIMGELLHKDAEAFGWA-----------VPNATFD--WT CIPKKL+H A + E + DA FG + P D W CIPKKLFHIGATLRESIQADANFFGISSVGVKPDEMGQPPTLKTDQNWM scaffold_7:subs 8720 tacaactcaggatagtacgggattgattgggacggagcccataagcata gtcaattatgcctgactacacattgtcctgtacaatgaccctacaaagt tccagactctatgaactaacgctcgaagtgcgatagcgattaaatatgg gi|288565202|gb 91 KLVTSVQDYIHGLNFKYRVDLRDKKVKYENFLGTFKDAHTLTLTNPAKG + ++Q+YI LNFKYRV LR+K V+Y N L +FKD HT+ L + KG AVKDNIQNYIRSLNFKYRVGLREKSVQYLNKLASFKDNHTVELVD-KKG scaffold_7:subs 8867 ggagaacatacatatataggccgaagctcaacgttagacaggtgg aag ctaaataaatggtataagtgtgaagtaataatcctaaaactatta aag acacttgtctctaccgcgtattggttgtgcagtccattcccgatt ggc gi|288565202|gb 140 KPPKDVTFRRALIAVGGRPKSLDCPGADLAISSDDIFSRPTPPGKTLVV + ++T R L+A GGRP LDC G DLAISSDD+F PGKTL V Q-TSEITASRFLVATGGRPTPLDCEGGDLAISSDDVFFLDKDPGKTLCV scaffold_7:subs 9011 c aagaagtctcggaggccactgtggggtgatagggttcgagcgaattg a cgatcccgtttccgggccctagaggatctcgaattttaaacgactgt a ttatctgtttggttaaaaagttatccgatgttttttatatgtaagcg gi|288565202|gb 189 GASYVALECAGFLKAQGFDVTVMVRSILLRGFDTDMAARIGTYMEEEAK GASY++LECAGFL DVTV VRSILLRGFD + + RIG YM+E GASYISLECAGFLAGMSKDVTVAVRSILLRGFDRECSERIGDYMKEHG- scaffold_7:subs 9155 ggttaatgtggtcggaaaggagggcaacccgtgcgttgcaggtaagcg gccatgtagcgttcgtgaatctctggtttggtagagcagtgaataaag atccttgatcatgtagtgttatgtctctaaatttgcaagtgtcgaacg gi|288565202|gb 238 IDFIKGAVPTSIEQLANG----------EGIYDTVLNATGRNPDVSGLN + F P+ +E++ N +YDTVL A GR D L VKFKTKVTPSKLERVENDRIKVTFSDGTDDVYDTVLGAVGRTADTIKLR scaffold_7:subs 9299 gataaagacaacgaggagcaagattggagggtgagcggggaaggaaacc tatacatccgatagtaaagtatctcagcaataacttgctggccactatg cgcagaatacgcagagttccgcacttattttcctcgatctattctcagc gi|288565202|gb 277 LPAAGVGLNPKTGRIAVTHEQTSAPHIYAVGDVIDG-PELTPVAIQAGR L + V NPK +I +EQ+S P+IYA+GDV+DG PELTPVAIQAG+ LESVNVDTNPKNRKIKTINEQSSCPNIYAIGDVMDGCPELTPVAIQAGK scaffold_7:subs 9446 cgtgaggaacaacaaaaaagctttcaatgagggaggtcgcacggacgga tactatacacaagatactaaaccgcatactgattaggcatcctctacga catccttttcgttacgcataatgtctttttgctgtattgaactccataa gi|288565202|gb 325 LLAKRLFDNSATLMAYDKVCTAVFTPIEYGCCGLSEDAAIETIGADNLG LA+RL+ S M Y +CT VFTPIEY C GLSE+ AI G D + ALARRLYGGSKEPMDYINICTTVFTPIEYACIGLSEEDAIAKHGKDGIE scaffold_7:subs 9593 gtgccctggtagcagtaaataagtacagtgtagctggggagacgaggag ctcggtaggcaactaatatgccttcctaacgtgtcaaactcaagaagta tatttttttaaacgttctttagacaacacttccataatgtagcggtaca gi|288565202|gb 374 VYHQSFTPLEWSLS-HDRALAKECYCKLIVD-RTQNDRVVGFHYLGPNA VYH+ F PLEWSLS HD + K++VD ++ +++VVG+HY+GPNA VYHREFLPLEWSLSRHD----SNAFAKILVDAKSSDEQVVGIHYVGPNA scaffold_7:subs 9740 gtcagttccgttctccg tagtgaatgggattggcgggactggcag taagattctagctcgaa cactcatttacaccaaattgtaatgcac tttgatacgagctcatt ctttcacgttgatttgggtacctttctt gi|288565202|gb 421 GEVTQ AVGIAMKLNASYDDFVSTVGI GE+ Q G++MK +Y + TVGI GEIMQ GYGVSMKNGLTYRQLTDTVGI scaffold_7:subs 9875 ggaacGTAAGTC Intron 1 AAGgtggtaaagtataccagagga gatta<0-----[9890 :10008]-0>gagtctaagtcagatcactgt agtgg gttaaggttaacagtttattt gi|288565202|gb 447 HPTTAEIFTTLEITKESGLDASAAGC HPT++E + TL ITK SG DA+A GC HPTSSEELVTLSITKSSGDDAAAGGC scaffold_7:subs10072 ccattggcgactaaaaaggggggggt accccaattctctcagggaacccggg taaaaaataaatctgttctcctttac // >scaffold_7:subseq(380671,20155).pep LVVIGGGSGGMAAAKEAALLGAKVALCDFVKPSPEGTTWGLGGTCVNVGCIPKKLFHIGA TLRESIQADANFFGISSVGVKPDEMGQPPTLKTDQNWMAVKDNIQNYIRSLNFKYRVGLR EKSVQYLNKLASFKDNHTVELVDKKGQTSEITASRFLVATGGRPTPLDCEGGDLAISSDD VFFLDKDPGKTLCVGASYISLECAGFLAGMSKDVTVAVRSILLRGFDRECSERIGDYMKE HGVKFKTKVTPSKLERVENDRIKVTFSDGTDDVYDTVLGAVGRTADTIKLRLESVNVDTN PKNRKIKTINEQSSCPNIYAIGDVMDGCPELTPVAIQAGKALARRLYGGSKEPMDYINIC TTVFTPIEYACIGLSEEDAIAKHGKDGIEVYHREFLPLEWSLSRHDSNAFAKILVDAKSS DEQVVGIHYVGPNAGEIMQGYGVSMKNGLTYRQLTDTVGIHPTSSEELVTLSITKSSGDD AAAGGC // >scaffold_7:subseq(380671,20155).[8573:10149].sp CTTGTTGTAATTGGTGGTGGTAGTGGAGGAATGGCTGCTGCTAAAGAAGCAGCGCTTCTG GGGGCCAAAGTGGCACTATGTGATTTCGTTAAGCCTTCACCGGAGGGAACTACATGGGGA CTGGGAGGAACCTGTGTCAATGTAGGTTGTATCCCCAAAAAGCTATTCCATATCGGTGCA ACTTTGAGAGAATCCATTCAAGCAGACGCGAACTTTTTCGGGATATCATCGGTTGGGGTC AAGCCAGATGAAATGGGCCAGCCACCTACTTTAAAAACAGATCAAAATTGGATGGCAGTC AAAGACAATATTCAGAATTACATTCGCAGTTTAAACTTCAAGTACAGGGTTGGACTTCGT GAGAAGAGTGTTCAGTATCTGAACAAACTGGCTTCCTTCAAAGATAATCACACCGTCGAG TTAGTTGATAAGAAGGGCCAAACTAGTGAAATTACCGCTTCGCGTTTTCTTGTGGCGACT GGTGGACGACCAACACCATTGGATTGTGAAGGTGGCGACTTGGCAATTTCGAGTGATGAT GTTTTTTTTCTAGATAAAGATCCGGGTAAAACATTGTGCGTGGGAGCTTCCTACATTAGT TTGGAATGTGCCGGATTTCTGGCTGGAATGAGTAAGGATGTTACAGTTGCGGTTCGCAGT ATCCTTCTACGAGGATTTGATCGTGAGTGCTCAGAACGGATTGGGGATTACATGAAAGAA CACGGGGTCAAGTTCAAAACGAAAGTAACTCCAAGCAAGCTCGAAAGGGTAGAGAATGAT CGCATCAAGGTCACATTCTCTGATGGAACTGATGATGTTTACGACACTGTCCTGGGAGCT GTCGGTAGAACTGCTGACACTATCAAACTGCGCCTCGAATCTGTCAACGTTGATACTAAT CCCAAGAATCGTAAAATCAAGACCATAAATGAACAATCTTCGTGTCCCAATATTTATGCT ATTGGGGACGTTATGGATGGATGTCCTGAGCTAACACCCGTTGCCATCCAAGCTGGAAAA GCTTTAGCTCGTCGTCTTTATGGTGGTTCAAAAGAACCCATGGATTATATCAATATTTGT ACAACGGTATTCACACCAATCGAATACGCTTGTATCGGCCTATCTGAAGAAGATGCGATT GCAAAGCACGGGAAGGATGGAATCGAAGTTTATCATAGGGAATTTTTACCCCTGGAATGG TCCCTTTCCCGACATGATTCCAATGCTTTTGCCAAAATCTTGGTTGATGCGAAATCTTCT GATGAGCAGGTGGTTGGAATCCACTATGTTGGTCCCAATGCTGGAGAGATTATGCAGGGG TATGGTGTATCAATGAAGAATGGTTTAACATACAGACAGCTTACTGATACAGTTGGTATT CATCCAACATCATCAGAAGAACTTGTAACACTATCTATCACTAAGAGTAGTGGCGATGAC GCCGCTGCTGGTGGATGC // scaffold_7:subseq(380671,20155) GeneWise match 8573 10149 528.47 + . scaffold_7:subseq(380671,20155)-genewise-prediction-1 scaffold_7:subseq(380671,20155) GeneWise cds 8573 9889 0.00 + 0 scaffold_7:subseq(380671,20155)-genewise-prediction-1 scaffold_7:subseq(380671,20155) GeneWise intron 9890 10008 0.00 + . scaffold_7:subseq(380671,20155)-genewise-prediction-1 scaffold_7:subseq(380671,20155) GeneWise cds 10009 10149 0.00 + 0 scaffold_7:subseq(380671,20155)-genewise-prediction-1 // genewise output Score 18.15 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|288565202|gb 269 NPDVSGLNLPAAGVGLNPKTGRIAVT +P +S L A + + P T R+AVT SPSISILGTVAISIPVRPTTTRMAVT scaffold_7:subs-1762 tctatacgaggatacgccaaaaagga ccctcttgctctctctgccccgtctc cagagtaaaagagtattggggagaga // >scaffold_7:subseq(380671,20155).pep SPSISILGTVAISIPVRPTTTRMAVT // >scaffold_7:subseq(380671,20155).[1762:1683].sp TCCCCATCGATATCGATTCTAGGAACAGTAGCGATATCGATTCCAGTTCGTCCGACGACG ACGAGAATGGCAGTGACA // scaffold_7:subseq(380671,20155) GeneWise match 1762 1685 18.15 - . scaffold_7:subseq(380671,20155)-genewise-prediction-1 scaffold_7:subseq(380671,20155) GeneWise cds 1762 1685 0.00 - 0 scaffold_7:subseq(380671,20155)-genewise-prediction-1 //