genewise output Score 368.46 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000081_1.0 125 SAHDYDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGG S +D D I+IGGGSGG++ AKEAA G KV + D+V PS QGT WGLGG SQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGG supercont1.675: 1969 tctgggtagagggtggagggagggaaggaggctgtgactacgactgtgg caaatattttgggcggtcccaaccaagcatcttaatacccagcaggtgg tacttcccccatctttgatcaaatactaagcttccggataaatagtgat SPP00000081_1.0 174 TCVNVGCIPKKLMHQAALLGHALQDAKKYGWEYN-QQVKHNWE TCVNVGC+PKK+MH A L + DA+ GW+ +KH+W TCVNVGCVPKKIMHYAGLQAINMHDAQALGWQVEADSIKHDWT supercont1.675: 2116 atgaggtgcaaaactggtcgaaacggcgcgtcggggaaacgta cgtatggtcaattaacgtactataacactggatacagtaaagc ccgtattggggcgccttagtctgcccggggggaggttcgccga SPP00000081_1.0 216 MTEAIQSHIGSLNWGYRVTLREK + E +Q+H+GSLNWGY++ LR A:T[act] LVETVQNHVGSLNWGYKLGLRSN supercont1.675: 2245 AGTATGTT Intron 1 CAGCTcggagcacggttatgtatgccta <1-----[2246 : 4111]-1> ttactaaatgctaggaatgtgca cgatagccggggtgctagcagcc SPP00000081_1.0 240 GVTYVNSFGEFVDLHK KATNKKG V Y+N+ F+D H T KG KVNYINATAAFIDAHT I:V[gtc] TYT-LKG supercont1.675: 4183 agataagaggtaggcaGGTATGCA Intron 2 CAGTCata cag ataataccccttacac <1-----[4232 : 4972]-1> cac tag gcccccccggtctgct tct cgt SPP00000081_1.0 264 QETFYTASKFVIATGERPRYL-GIQGDKEYCIT E +A+ ++IA G RP I G E+ IT VEKTLSAANLLIAVGGRPVIPESIPGALEHAIT supercont1.675: 4993 ggaactggaccaggggacgacgtacggcgcgaa taactcccatttctgggcttcactcgctaactc tagttgggtggtcttagcccgagagatcgtcta SPP00000081_1.0 296 DDLFSLPYCPGCTLVVGASYVGL DD+FSL PG TL VGASY+ L S:S[agc] DDIFSLYTSPGRTLCVGASYISL supercont1.675: 5092 AGGTGAGTT Intron 3 CAGCggattctatcgaactgggatatc <2-----[5094 : 5451]-2> aattctacccggctgtgcgatct ctccgctgcgagtacaccctctc SPP00000081_1.0 320 ECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRKFT EC GFL LG +V V +RS+ LRGFD++ +EKV +++ GV F +++ ECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHKQYV supercont1.675: 5522 gtggtcagcgtgggggaaaacccgtgcctagagggcagacggatcactg agggttaatgaatatctggtctggtagaggaatcattaatgtctaaaat gtcgtcgacatggcgcgattagtctcagctggggctgcggtgcccggcc SPP00000081_1.0 369 PILVQQLEK LPGKLKVVAKSTEG P L+++ L+V T PSLIKKTSS G:G[ggt] ---DLEVTMTHTVT supercont1.675: 5669 ctcaaaattGGTAAGGT Intron 4 CAGGT gtggaaacaga ccttaaccc <1-----[5697 : 6584]-1> atatctcactc gggcggcaa cggtcgacccc SPP00000081_1.0 393 PETVEGIYNTVLLAIGRDSCTRKIGLE E + YNTV+ A GR + T + L NEEIVKSYNTVMFATGRRADTDGLNLA K:A[gct] supercont1.675: 6620 aggagattaagatgagccggaggcacgGGTAGGTG Intron 5 aaattacaactttccgggcacagtatc <1-----[6702 : 7084] tggcgggccgtgcccccagcttttcgt SPP00000081_1.0 420 IGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQ G+ NGK+ + + T+V H+YAIGD +PELTPVA+Q AGLSALP-NGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQ supercont1.675: 7082 CAGCTggtagcc agacgagtgggatgtcatgaggtgcgacgcacgggc -1> cgtgctc agatccaacatcctcatactgagcaagcatcctcta ctgttac tagctaccctggcagccccatctaaagtagtcacta SPP00000081_1.0 465 AGKLLARRLFGVSLEKC DYINIPTTV AG+ LARR+FG S + DY + T V AGQYLARRVFGGSSKNM DYKMVATAV supercont1.675: 7216 ggctcgcagtggttaaaGTACGTT Intron 6 CAGgtaaggagg cgaatcggttggccaat<0-----[7267 : 8334]-0>aaattccct cagcttcagttaacgtg ccggacgcg SPP00000081_1.0 491 FTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTV FTP EYG G SEE A+ + ++ +EVY F LE FTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGA supercont1.675: 8362 tactgtggggtaggggtaatggggaggtctgtaacgggg tcctaagctgagaaactcctgaactatattatcctacgc cgctgcgggactggtcgcctcatgtaatacacaggggcc SPP00000081_1.0 530 AGRD-NNTCYAKIICNKFDNERVVGF D +TC AK++C K +NERVVGF YDADFGDTCLAKLVCLKNENERVVGF supercont1.675: 8479 GTACATC Intron 7 GAGtgggtggatcgacgtcaagagcgggt <0-----[8479 : 9197]-0>aacatgacgtcattgtaaaaagttgt ctcctctacgtgggtcgtgcagttcc SPP00000081_1.0 555 HLLGPNAGEITQ FAAAMKCGLTK H +GPNAGEITQ +A A+K G+TK HFIGPNAGEITQ G:G[ggt] YALALKAGVTK supercont1.675: 9276 ctagcagggaacGGTACGAC Intron 8 CAGGTtgcgcagggaa attgcacgatca <1-----[9313 :10000]-1> actctacgtca tctctccagcta ttgccagtgga SPP00000081_1.0 579 QLLDDTIGIHPTCGEVFTTLEITKSSGLD-ITQKGCXG + DDT+GIHPT E F LEIT+ SG + + GC G AMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG supercont1.675:10036 gatggaggaccagggttcgcgaaacagattgggggtgg cttaactgtaccacactactatcggggacgtcaggggg cgctctatctgtctggctgggcgactcgcgttacctat // Making a T in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a G in phase 1 intron >supercont1.675:subseq(5523,20149).pep SQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKK IMHYAGLQAINMHDAQALGWQVEADSIKHDWTTLVETVQNHVGSLNWGYKLGLRSNKVNY INATAAFIDAHTVTYTLKGVEKTLSAANLLIAVGGRPVIPESIPGALEHAITSDDIFSLY TSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTF HKQYVPSLIKKTSSGDLEVTMTHTVTNEEIVKSYNTVMFATGRRADTDGLNLAAAGLSAL PNGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKNMDYKMVA TAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGAYDADFGDTCLAKLVCLKN ENERVVGFHFIGPNAGEITQGYALALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSGK SWVAEGGCGG // >supercont1.675:subseq(5523,20149).[1969:10149].sp TCTCAATACGATGTTGACTTCATCGTCATCGGAGGTGGCTCTGGTGGTATGGCAGCTGCC AAAGAAGCAGCTAAAAACGGTGCAAAAGTGGCCCTTTTTGACTACGTGAAGCCATCTACA CAAGGAACTCAATGGGGTTTGGGAGGTACCTGCGTGAATGTAGGTTGTGTGCCGAAGAAG ATCATGCACTACGCTGGTTTACAGGCTATCAATATGCACGACGCCCAGGCGCTGGGGTGG CAGGTAGAGGCGGATAGTATCAAGCACGACTGGACAACTCTCGTGGAAACTGTACAGAAC CACGTGGGGTCGTTGAATTGGGGCTATAAATTGGGCCTACGGTCCAACAAGGTCAACTAC ATCAACGCCACCGCGGCGTTTATCGATGCGCACACTGTCACTTACACTCTCAAGGGTGTT GAAAAGACTCTTTCGGCGGCGAATCTGCTGATTGCCGTTGGTGGAAGGCCCGTCATCCCG GAATCGATACCGGGAGCTCTCGAGCATGCCATTACAAGCGACGATATCTTCTCGCTCTAT ACGTCCCCGGGAAGGACTCTATGCGTAGGCGCCAGCTATATCTCTCTCGAGTGTGGCGGG TTTCTCAAGGAACTCGGATATGAGGTGGACGTGGCCATGAGAAGTATTCCACTGCGTGGC TTTGACCGACAGTGCAGTGAGAAGGTGGCGGACCTTATGGACAAGCTGGGTGTGACCTTC CACAAGCAGTACGTCCCGTCGCTGATCAAGAAGACCTCATCAGGTGACTTGGAGGTTACC ATGACACACACCGTCACCAATGAGGAGATCGTGAAGTCGTACAACACGGTTATGTTCGCC ACCGGCCGCCGAGCGGACACTGATGGTCTTAACCTGGCTGCTGCCGGTTTGAGTGCTCTA CCCAATGGAAAGCTCGCTACAGACTACGCCGATGTGACGTCCGTATCGCACATCTACGCC ATAGGTGACTGTGCACAAGAAAGGCCTGAACTGACTCCCGTAGCCGTTCAAGCCGGACAG TACCTTGCTCGCAGAGTGTTTGGTGGATCATCCAAGAATATGGACTACAAGATGGTAGCC ACGGCCGTGTTCACGCCCTTTGAGTACGGGGCGGTGGGATACAGTGAGGAGGATGCCTTG ACCACCTTTGGCGAAGATGCGATTGAAGTATATCTATTCGAATTCACAACGCTGGAGGCG GGCGCCTACGATGCCGACTTTGGCGATACATGCCTGGCTAAGCTGGTGTGTCTCAAGAAT GAGAACGAACGGGTTGTTGGCTTCCATTTCATTGGCCCTAACGCCGGAGAGATCACTCAA GGTTATGCTCTGGCCCTCAAAGCGGGTGTGACGAAAGCCATGTTCGATGACACTGTAGGT ATCCATCCGACTGACGCTGAGTCGTTCCATGCGCTGGAGATCACGAGACGCAGTGGCAAG TCCTGGGTTGCTGAAGGCGGCTGTGGAGGT // supercont1.675:subseq(5523,20149) GeneWise match 1969 10149 370.46 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 1969 2245 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 2246 4111 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4112 4231 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 4232 4972 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4973 5093 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5094 5451 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 5452 5696 0.00 + 1 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5697 6584 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 6585 6701 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 6702 7084 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 7085 7266 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 7267 8334 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 8335 8478 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 8479 9197 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 9198 9312 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 9313 10000 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 10001 10149 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 // genewise output Score 16.90 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000081_1.0 94 NIFVNKVHVG---GCDRTFQA N++V VH+G GC+ Q+ NLYVGSVHIGIQWGCEVVHQS supercont1.675-15750 attggagcagactgtgggcct atatggtatgtagggattaac tgcattatctaagatgttcat // >supercont1.675:subseq(5523,20149).pep NLYVGSVHIGIQWGCEVVHQS // >supercont1.675:subseq(5523,20149).[15750:15686].sp AATTTGTACGTAGGTAGTGTACATATCGGTATACAATGGGGATGTGAGGTTGTTCACCAA TCT // supercont1.675:subseq(5523,20149) GeneWise match 15750 15688 18.90 - . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 15750 15688 0.00 - 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 //