genewise output Score 359.00 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000080_1.0 44 DLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV D +VIGGGSGG+A AKEAA+ G KVA+ DYV+PS +GT+WGLGGTCVNV DFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNV supercont1.675: 1984 gtagagggtggagggagggaaggaggctgtgactacgactgtggatgag attttgggcggtcccaaccaagcatcttaatacccagcaggtggcgtat cccccatctttgatcaaatactaagcttccggataaatagtgatccgta SPP00000080_1.0 93 GCIPKKLMHQAALLGGMIRDAHHYGWEV-AQPVQHNWK GC+PKK+MH A L + DA GW+V A ++H+W GCVPKKIMHYAGLQAINMHDAQALGWQVEADSIKHDWT supercont1.675: 2131 gtgcaaaactggtcgaaacggcgcgtcggggaaacgta ggtcaattaacgtactataacactggatacagtaaagc ttggggcgccttagtctgcccggggggaggttcgccga SPP00000080_1.0 130 MAEAVQNHVKSLNWGHRVQLQDR + E VQNHV SLNWG+++ L+ T:T[act] LVETVQNHVGSLNWGYKLGLRSN supercont1.675: 2245 AGTATGTT Intron 1 CAGCTcggagcacggttatgtatgccta <1-----[2246 : 4111]-1> ttactaaatgctaggaatgtgca cgatagccggggtgctagcagcc SPP00000080_1.0 154 KVKYFNIKASFVDEHT RGVDKGG KV Y+N A+F+D HT KG KVNYINATAAFIDAHT V:V[gtc] TYTLKGV supercont1.675: 4183 agataagaggtaggcaGGTATGCA Intron 2 CAGTCatacagg ataataccccttacac <1-----[4232 : 4972]-1> cactagt gcccccccggtctgct tctcgtt SPP00000080_1.0 178 KATLLSAEHIVIATGGRPRYPTQVKGALEYGIT + TL SA +++IA GGRP P + GALE+ IT EKTL-SAANLLIAVGGRPVIPESIPGALEHAIT supercont1.675: 4996 gaac tggaccaggggacgacgtacggcgcgaa aact cccatttctgggcttcactcgctaactc agtt gggtggtcttagcccgagagatcgtcta SPP00000080_1.0 211 DDIFWLKESPGKTSVPAAEDVAL DDIF L SPG+T A ++L S:S[agc] DDIFSLYTSPGRTLCVGASYISL supercont1.675: 5092 AGGTGAGTT Intron 3 CAGCggattctatcgaactgggatatc <2-----[5094 : 5451]-2> aattctacccggctgtgcgatct ctccgctgcgagtacaccctctc SPP00000080_1.0 235 ECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCV EC GFL +G + V MRSIPLRGFD+Q S V + M+ G F K V ECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHKQYV supercont1.675: 5522 gtggtcagcgtgggggaaaacccgtgcctagagggcagacggatcactg agggttaatgaatatctggtctggtagaggaatcattaatgtctaaaat gtcgtcgacatggcgcgattagtctcagctggggctgcggtgcccggcc SPP00000080_1.0 284 PSHIKKLPT QLQVTWEDHASGKE PS IKK + L+VT + +E PSLIKKTSS N:G[ggt] DLEVTMTHTVTNEE supercont1.675: 5669 ctcaaaattGGTAAGGT Intron 4 CAGGTgtggaaacagaagg ccttaaccc <1-----[5697 : 6584]-1> atatctcactcaaa gggcggcaa cggtcgacccctgg SPP00000080_1.0 308 DTGTFDTVLWAIGRVPETRTLNLE +++TV++A GR +T LNL IVKSYNTVMFATGRRADTDGLNLA K:A[gct] supercont1.675: 6629 agattaagatgagccggaggcacgGGTAGGTG Intron 5 ttacaactttccgggcacagtatc <1-----[6702 : 7084] cgggccgtgcccccagcttttcgt SPP00000080_1.0 332 AGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIK AG+S P N K+ D + TSV HIYAIGD A+ RPELTP A++ AGLSALP-NGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQ supercont1.675: 7082 CAGCTggtagcc agacgagtgggatgtcatgaggtgcgacgcacgggc -1> cgtgctc agatccaacatcctcatactgagcaagcatcctcta ctgttac tagctaccctggcagccccatctaaagtagtcacta SPP00000080_1.0 377 AGKLLAQRLFGKSS-TLMDYSNVYHAYYK AG+ LA+R+FG SS ++ + N A AGQYLARRVFGGSSKNMVRFPNKTCAVIL supercont1.675: 7216 ggctcgcagtggttaaagctcaaatggac cgaatcggttggccaattgtcaacgcttt cagcttcagttaacgtgattacgcttatg SPP00000080_1.0 405 LEFTVADRDASQCYIKMVCMREP + C K+VC++ P:S[agc] IADEYDADFGDTCLAKLVCLKNE supercont1.675: 7303 AGTCCTTT Intron 6 TAGGCagggtgggtggatcgacgtcaag <1-----[7304 : 9183]-1> tcaaaacatgacgtcattgtaaa tgcgctcctctacgtgggtcgtg SPP00000080_1.0 429 PQLVLGLHFLGPNAGEVTQ FALG + V+G HF+GPNAGE+TQ +AL NERVVGFHFIGPNAGEITQ G:G[ggt] YALA supercont1.675: 9255 agcgggtctagcagggaacGGTACGAC Intron 7 CAGGTtgcg aagttgtattgcacgatca <1-----[9313 :10000]-1> actc cagttcctctctccagcta ttgc SPP00000080_1.0 453 IKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSG +K G + A TVGIHPT +E L I++RSG LKAGVTKAMFDDTVGIHPTDAESFHALEITRRSG supercont1.675:10015 cagggaagatggaggaccagggttcgcgaaacag tacgtcacttaactgtaccacactactatcgggg cagtggacgctctatctgtctggctgggcgactc // Making a T in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a S in phase 1 intron Making a G in phase 1 intron >supercont1.675:subseq(5523,20149).pep DFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKKIMHYA GLQAINMHDAQALGWQVEADSIKHDWTTLVETVQNHVGSLNWGYKLGLRSNKVNYINATA AFIDAHTVTYTLKGVEKTLSAANLLIAVGGRPVIPESIPGALEHAITSDDIFSLYTSPGR TLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHKQYV PSLIKKTSSGDLEVTMTHTVTNEEIVKSYNTVMFATGRRADTDGLNLAAAGLSALPNGKL ATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKNMVRFPNKTCAVI LSIADEYDADFGDTCLAKLVCLKNENERVVGFHFIGPNAGEITQGYALALKAGVTKAMFD DTVGIHPTDAESFHALEITRRSG // >supercont1.675:subseq(5523,20149).[1984:10116].sp GACTTCATCGTCATCGGAGGTGGCTCTGGTGGTATGGCAGCTGCCAAAGAAGCAGCTAAA AACGGTGCAAAAGTGGCCCTTTTTGACTACGTGAAGCCATCTACACAAGGAACTCAATGG GGTTTGGGAGGTACCTGCGTGAATGTAGGTTGTGTGCCGAAGAAGATCATGCACTACGCT GGTTTACAGGCTATCAATATGCACGACGCCCAGGCGCTGGGGTGGCAGGTAGAGGCGGAT AGTATCAAGCACGACTGGACAACTCTCGTGGAAACTGTACAGAACCACGTGGGGTCGTTG AATTGGGGCTATAAATTGGGCCTACGGTCCAACAAGGTCAACTACATCAACGCCACCGCG GCGTTTATCGATGCGCACACTGTCACTTACACTCTCAAGGGTGTTGAAAAGACTCTTTCG GCGGCGAATCTGCTGATTGCCGTTGGTGGAAGGCCCGTCATCCCGGAATCGATACCGGGA GCTCTCGAGCATGCCATTACAAGCGACGATATCTTCTCGCTCTATACGTCCCCGGGAAGG ACTCTATGCGTAGGCGCCAGCTATATCTCTCTCGAGTGTGGCGGGTTTCTCAAGGAACTC GGATATGAGGTGGACGTGGCCATGAGAAGTATTCCACTGCGTGGCTTTGACCGACAGTGC AGTGAGAAGGTGGCGGACCTTATGGACAAGCTGGGTGTGACCTTCCACAAGCAGTACGTC CCGTCGCTGATCAAGAAGACCTCATCAGGTGACTTGGAGGTTACCATGACACACACCGTC ACCAATGAGGAGATCGTGAAGTCGTACAACACGGTTATGTTCGCCACCGGCCGCCGAGCG GACACTGATGGTCTTAACCTGGCTGCTGCCGGTTTGAGTGCTCTACCCAATGGAAAGCTC GCTACAGACTACGCCGATGTGACGTCCGTATCGCACATCTACGCCATAGGTGACTGTGCA CAAGAAAGGCCTGAACTGACTCCCGTAGCCGTTCAAGCCGGACAGTACCTTGCTCGCAGA GTGTTTGGTGGATCATCCAAGAATATGGTACGTTTTCCAAACAAGACCTGTGCTGTAATT CTGAGCATTGCGGACGAGTACGATGCCGACTTTGGCGATACATGCCTGGCTAAGCTGGTG TGTCTCAAGAATGAGAACGAACGGGTTGTTGGCTTCCATTTCATTGGCCCTAACGCCGGA GAGATCACTCAAGGTTATGCTCTGGCCCTCAAAGCGGGTGTGACGAAAGCCATGTTCGAT GACACTGTAGGTATCCATCCGACTGACGCTGAGTCGTTCCATGCGCTGGAGATCACGAGA CGCAGTGGC // supercont1.675:subseq(5523,20149) GeneWise match 1984 10116 359.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 1984 2245 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 2246 4111 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4112 4231 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 4232 4972 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4973 5093 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5094 5451 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 5452 5696 0.00 + 1 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5697 6584 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 6585 6701 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 6702 7084 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 7085 7303 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 7304 9183 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 9184 9312 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 9313 10000 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 10001 10116 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 // genewise output Score 16.96 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000080_1.0 335 ISTNPKNQKIIV I TNPKN+ I + IKTNPKNKHIPI supercont1.675:-2713 aaaacaaacaca tacacaaaatct caatagcataaa // >supercont1.675:subseq(5523,20149).pep IKTNPKNKHIPI // >supercont1.675:subseq(5523,20149).[2713:2676].sp ATCAAAACAAATCCAAAGAACAAACATATACCAATA // supercont1.675:subseq(5523,20149) GeneWise match 2713 2678 16.96 - . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 2713 2678 0.00 - 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 //