genewise output Score 19.44 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000080_1.0 8 MVAALRGPSRRFRPRTR ++AALR P +R++ R R VMAALRRPGQRYKGRDR PHYCAscaffold_816655 gaggccccgcctagagc ttcctggcgagaaggag ggcagatacgacaaacc // >PHYCAscaffold_84:subseq(86261,21487).pep VMAALRRPGQRYKGRDR // >PHYCAscaffold_84:subseq(86261,21487).[16655:16705].sp GTGATGGCCGCACTGCGACGTCCAGGCCAGCGATACAAAGGAAGAGACCGC // PHYCAscaffold_84:subseq(86261,21487) GeneWise match 16655 16705 19.44 + . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 16655 16705 0.00 + 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 // genewise output Score 441.80 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000080_1.0 43 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN +DL+VIGGGSGGLAC+KEAA G+KV V DYV+PSP+GT WGLGGTCVN YDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVN PHYCAscaffold_-11469 tgcggagggtggcgttagggttgcagtgcgtgactccgattgcggatga aattttgggcggtcgcaaccctgaatgttaatacccagccggtggcgta ctaggtccatacgcccgagctctggctaacccgggtgcgtgtagcgtct SPP00000080_1.0 92 VGCIPKKLMHQAALLGGMIR-DAHHYGWEVAQ----PVQHNWKTMAEAV VGCIPKKLMHQ++L+G +I D ++GW ++ NWK + V VGCIPKKLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPTFNWKQLVSNV PHYCAscaffold_-11322 ggtacaacaccatcagggaccgggatgtacttgggagcatatactgtag tggtcaattaagcttgattaaagcatggatccgagaccctagaattcat cccccggcgcactatcgccctcctctcgttgtgtactattcggggggcg SPP00000080_1.0 136 QNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSA ++KS+N+ ++V+L+ + VKY N+ SFV+ HT+ ++ DGYIKSINFKYKVELRSKYVKYENFLGSFVNPHTLELWHPRKGTKQITT PHYCAscaffold_-11175 ggtaaaaatataggccaatgatgatcgttgaccatgttcccagaacaaa agatagtataaatatggaataaaattgcttacactatgacgagcaatcc cgccaccccgcgggactgctgcgccgctctcccaggggctcgcaggcta SPP00000080_1.0 185 EHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKES-PGKTSVPAAEDV +VIA GGRP+ T G E+ I+SDDIFW+K+ PGKT V A V RDVVIAVGGRPKELTCPGG--EHAISSDDIFWMKKKEPGKTLVVGASYV PHYCAscaffold_-11028 cgggaggggccagtatcgg gcgataggattaaaagcgaacggggttg gatttctgggcaatcgcgg aactcgaattgtaaaacgactttgccat ttgctttttacgggctata gtgtgtcttcgggaggacgttgtccgcg SPP00000080_1.0 233 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHME-SHGTQFLK ALECAGFL G+G D VM+RSI LRGFDQ M+ + E+ME G +F++ ALECAGFLKGMGYDVKVMVRSILLRGFDQDMADKIGEYMEVQSGIEFIR PHYCAscaffold_-10887 gcgtggtcagagtggagagctatccgtgcgaggaaggtaggctgagtac ctagcgttagtgaatatttgctttggtaaatcaatgaatatacgtattg cggtaccggcgcctggggcactgttcccgcgccgtcgcggggattgctg SPP00000080_1.0 281 GCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLN VP I KL QL V W G+ FDTVL A GR P+ LN KTVPQSITKLENGQLLVKWTSE-DGESCEEAFDTVLNATGRDPDVAKLN PHYCAscaffold_-10740 aagcctaaacgagcccgataag gggatgggtgagcagagcgcgggaca actcactcataagatttagcga agaggaactacttaccggacatcata gaaggccgacgctgcgaggaca cagttgatcttgtcttcttttggggc SPP00000080_1.0 330 LEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAG L+KAG+ N K+ +I V E TS P+IYAIGDV + PELTP AI+AG LDKAGVKLNEKSGRIWVK-NEQTSTPNIYAIGDVIDA-PELTPVAIQAG PHYCAscaffold_-10596 cgagggacagatgcatga agcatacaatgagggagg cgcacggacgg taacgtataaacggtgta aaaccccatactgattac catcctctacg gcgtagggtggtaccggg cgggggcctccttttccg aacgtcctgta SPP00000080_1.0 379 KLLAQRLFGKSSTLMDYSN VYHAYYK +LL++RL+ S+ MDY VYH + RLLSRRLYNNSTVQMDYEK VYHTNFV PHYCAscaffold_-10455 ctctccttaatagcagtgaGTGTGCA Intron 1 GAGgtcaatg gttcggtaaacctataaaa<0-----[10398:10306]-0>taacatt agtgttgctcgggggccgg tccgctg SPP00000080_1.0 405 PLEFTVAD--RDASQ-CYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFA PLE++++ R A++ CY+K++C + + V+G H+LGPNAGEVTQ + PLEWSLSTDTRTAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMG PHYCAscaffold_-10284 ccgttttagacagggttttagatgaacgatgggtctcgcaggggacgag ctagctccacgcccacgatattgaacgaatttgtaatgcacgatcactg ggggggggcgcaaaggtcgggctcagttgcggcctctagttcggtacgg SPP00000080_1.0 451 LGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSGLEPTVTGC L +K G +Y Q++ TVGIHPT +E L ++K SG T GC LAMKLGFTYDQMVDTVGIHPTTAESFTTLEVTKSSGGATTGGGC PHYCAscaffold_-10137 tgaatgtatgcaggaggaccaaggttaacggaaaagggaagggt tctatgtcaaattactgtaccccactcctatcaggggcccgggg gcgggccgccagttccctcgggcggcgtgggggcttagctcgtc // >PHYCAscaffold_84:subseq(86261,21487).pep YDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ SSLIGEVIHHDGANFGWNLSSGDGNAPTFNWKQLVSNVDGYIKSINFKYKVELRSKYVKY ENFLGSFVNPHTLELWHPRKGTKQITTRDVVIAVGGRPKELTCPGGEHAISSDDIFWMKK KEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMADKIGEYMEVQSGIE FIRKTVPQSITKLENGQLLVKWTSEDGESCEEAFDTVLNATGRDPDVAKLNLDKAGVKLN EKSGRIWVKNEQTSTPNIYAIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQMDYEKVYH TNFVPLEWSLSTDTRTAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF TYDQMVDTVGIHPTTAESFTTLEVTKSSGGATTGGGC // >PHYCAscaffold_84:subseq(86261,21487).[11469:10004].sp TACGATCTAGTGGTGATTGGCGGCGGATCTGGAGGCCTGGCCTGCTCCAAGGAAGCGGCC TCTTTCGGTCAGAAGGTCTGTGTACTAGACTACGTCAAGCCGTCGCCTCAGGGCACGTCT TGGGGTCTAGGGGGCACGTGTGTCAATGTCGGCTGCATCCCCAAGAAGCTCATGCACCAA AGCTCTCTAATTGGCGAGGTCATCCACCATGACGGCGCTAACTTTGGCTGGAATCTTTCG TCTGGGGATGGAAACGCTCCAACTTTTAACTGGAAGCAGTTGGTGTCGAACGTGGACGGG TACATCAAAAGCATCAACTTCAAGTACAAGGTGGAGCTACGCAGTAAGTACGTTAAGTAC GAGAACTTCCTGGGCTCTTTCGTTAACCCCCACACATTGGAGTTGTGGCACCCTCGCAAG GGCACAAAGCAGATCACTACACGTGATGTGGTCATTGCTGTTGGTGGTCGACCCAAGGAG TTGACCTGTCCAGGTGGAGAGCATGCGATTTCGAGTGACGATATTTTCTGGATGAAGAAA AAGGAGCCAGGCAAGACTCTTGTGGTTGGCGCCTCGTACGTGGCCCTGGAGTGTGCAGGC TTCCTGAAGGGCATGGGCTACGATGTGAAGGTGATGGTCCGATCCATTTTGCTTCGTGGC TTCGACCAGGACATGGCCGACAAGATTGGCGAGTACATGGAGGTGCAGTCAGGTATTGAG TTCATTCGGAAGACAGTACCGCAGTCCATCACGAAACTCGAGAACGGTCAGCTCCTGGTA AAGTGGACAAGCGAAGACGGAGAGAGTTGTGAGGAAGCTTTCGATACTGTGCTTAACGCT ACTGGCCGTGATCCTGATGTGGCGAAGCTGAACCTGGACAAGGCTGGAGTGAAGCTGAAT GAGAAGTCTGGACGCATCTGGGTGAAGAACGAGCAGACGTCGACGCCCAACATTTACGCC ATTGGTGATGTTATCGACGCGCCAGAACTCACGCCTGTCGCCATTCAGGCTGGACGATTG CTTTCGCGTCGTTTGTACAATAACTCGACGGTGCAGATGGACTACGAGAAGGTTTACCAC ACGAACTTTGTGCCGCTGGAGTGGTCGTTGTCGACGGACACGCGCACAGCAGCAGAGTCG TGTTACTTGAAGGTGATCTGTGACAAAACGCGTGATAAGTTCGTGGTGGGCTTCCATTAC CTTGGACCGAATGCTGGCGAGGTGACTCAAGCCATGGGGTTGGCCATGAAGTTGGGCTTC ACGTACGACCAAATGGTTGATACCGTCGGCATTCACCCGACGACGGCCGAGTCGTTCACG ACTCTGGAGGTGACGAAGAGCAGTGGTGGAGCGACCACTGGCGGGGGTTGC // PHYCAscaffold_84:subseq(86261,21487) GeneWise match 11469 10006 446.79 - . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 11469 10399 0.00 - 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise intron 10398 10306 0.00 - . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 10305 10006 0.00 - 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 //