genewise output Score 321.67 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000080_1.0 44 DLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV DL+VIGGGSGGLA AKEAA+LG KV DYVEPSP+G+KWGLGGTCVNV DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNV gi|338242564|gb 9967 gtggagggaggtgggagggacggaggttgtggctccgtatgcggatgag attttggggggtcccaaccgtgcattgtaatacccagcaggtggcgtat tgggtccgtccggagggggggtcgcgttctgggaggtcggtgcggtgct SPP00000080_1.0 93 GCIPKKLMHQAALLGGMI-RDAHHYGWEVAQPVQHNWKTMAEAVQNHVK GCIPK +MH +A LG ++ A GW + W+ + + VQ ++K GCIPKIIMHNSAKLGQLMDHSAAPLGWSGTDGLTFVWQDLVKTVQLYIK gi|338242564|gb10114 gtacaaaacatgatgctagctggccgtagaggcatgtcgcgaagcctaa ggtcatttaaccatgattaacccctggggcagtcttgaattactatata tctggccgccgcggaaggctagcatcgtttctgaccggcgaggtatccg SPP00000080_1.0 141 SLNWGHRVQLQDRKVKYFNIKASFV--DEHTVRGVDKG--------GKA LN+ +R L+ V+Y+N KA+++ E G G G+ QLNFSYRRGLRSAGVEYINAKATLLAAPERAQSGAKSGRVVEYTLKGER gi|338242564|gb10261 ccatttccgccaggggtaagagaccggcgagctggatgcgggtacaggc atatcagggtggcgtaatacaccttcccagcacgcacggttaactagag atccacatctccctagttctatacccccgacggccgttagggtacgcgg SPP00000080_1.0 180 TLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTSVPA + A+ +++A GGRP P V GA+E +TSDD+F L P KT V KEVRAKCVLVAVGGRPYIPRDVPGAVELAVTSDDLFSLSREPKKTLVVG gi|338242564|gb10408 aggcgatgtgggggcctaccggcggggtggaaggttattcgcaaatggg aatgcagtttctgggcatcgatcgctatctcgaattgtcgacaactttg ggggggttgacgtaggctagctctgtggcggttcgttagcggggtgggt SPP00000080_1.0 229 AEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQ A +ALECAGFLT + D TV +RSI LRGFD+Q + + M+ GT+ ASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRQCAEHIQLVMKEQGTK gi|338242564|gb10555 gttagcgtggtcaccctggagtgctagccgtgcctggcactgaagcgaa ccatctagcgttcatgaatctgtgctttggtagagcaatatttaaagca ggctaagcggcgacgtttacgtaccagtctccagtgaccgggggaaccg SPP00000080_1.0 278 FLKGCVPSHIKKL-----------------PTNQLQVTWEDH-----AS FL+ ++++ T+ D AS FLEHEQVVSLQRVGEPDVAASDLAGDRGADTTSNTTADGGDKILVRFAS gi|338242564|gb10702 tcgcgcggtcccgggcggggagcgggcgggaataaagggggaacgctgt ttaaaattctagtgacatccgatcgaggcacccacccaggaatttgtcc cgacaaaggaacgcggtgctccacactggtggctgccctccgcccgcac SPP00000080_1.0 305 GKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATS G+E+ FDTV++A+GR T++L E AGI+ +P + KI+VD E TS GREEM--FDTVVYAVGRRACTQSLGCEAAGIAMHPASGKIVVDELEQTS gi|338242564|gb10849 gcgga tgaggtgggccgtacacgtggggagaccgtgaaggggcgcat ggaat tacttactgggcgcagtggaccgtctacccgatttaataacc acaag ccagccccgccaccatcccgcccccgccatcgtgccgagatc SPP00000080_1.0 354 VPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVYHAY P +YAIGDV GRPELTP AIKAG+LLA+RLFG ++ M Y+N+ APGVYAIGDVCHGRPELTPVAIKAGELLARRLFGGANEPMVYTNIPTVV gi|338242564|gb10990 gcggtgagggtcgccgcacggaagggtcgacctgggagcagtaaacagg ccgtactgatgaggcatcctctacgattcggttggcaacttacatcctt actccctacctcccgaatctccgccagccgcctacccacgtcatacgtc SPP00000080_1.0 403 YKPLEF---TVADRDASQCY------ + P+E+ +++ DA Y FTPIEYGCCGLSEEDAITRYGQDNIE I:V[gtc] gi|338242564|gb11137 tacagtgttgctggggaaatgcgaagGTGTTCCTC Intron 1 tcctaaggggtcaaactcgagaaata <2-----[11217:11324] ccaaatcccattaatccgactactcg SPP00000080_1.0 420 KMVCMREPPQLVLGLHFLGPN A K++C ++P ++G H + N A KIIC-KKPDNKIVGYHCIAMN A gi|338242564|gb11322 CAGCaaat aacgaaaggtctagaaGTAAGCG Intron 2 TAGg -2> attg aacaaattgaagtcta<0-----[11386:11508]-0>c accc gatccactctccccgc t SPP00000080_1.0 443 GEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSG GE TQG+AL +KCG + + VGIHPT +E + I++RSG GETTQGYALALKCGLTKDDLDAVVGIHPTDAESFHSMTITRRSG gi|338242564|gb11512 ggaacgtgtgcatgtaaggtgggggaccagggttctaaaaccag gaccagactctaggtcaaatacttgtaccacactactctcgggg agaggtcgggggtggcgctgcacgtccgtcaggccaggcttccc // Making a V in phase 2 intron >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).pep DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNVGCIPKIIMHNS AKLGQLMDHSAAPLGWSGTDGLTFVWQDLVKTVQLYIKQLNFSYRRGLRSAGVEYINAKA TLLAAPERAQSGAKSGRVVEYTLKGERKEVRAKCVLVAVGGRPYIPRDVPGAVELAVTSD DLFSLSREPKKTLVVGASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRQCAEHIQLVMK EQGTKFLEHEQVVSLQRVGEPDVAASDLAGDRGADTTSNTTADGGDKILVRFASGREEMF DTVVYAVGRRACTQSLGCEAAGIAMHPASGKIVVDELEQTSAPGVYAIGDVCHGRPELTP VAIKAGELLARRLFGGANEPMVYTNIPTVVFTPIEYGCCGLSEEDAITRYGQDNIEVKII CKKPDNKIVGYHCIAMNAGETTQGYALALKCGLTKDDLDAVVGIHPTDAESFHSMTITRR SG // >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).[9967:11643].sp GATTTGGTGGTGATTGGCGGCGGGAGTGGCGGCTTGGCGGCAGCGAAGGAGGCGGCGAGG CTGGGTGCCAAGGTCGTGTGTTTTGACTATGTGGAGCCGTCACCGCAGGGTTCCAAGTGG GGTCTGGGCGGGACGTGTGTGAACGTTGGTTGCATTCCGAAGATCATCATGCACAACTCG GCCAAGTTGGGACAATTGATGGACCATTCAGCGGCCCCACTTGGCTGGAGTGGTACTGAC GGTCTGACATTCGTCTGGCAGGACCTGGTAAAGACGGTTCAACTTTACATCAAGCAACTT AACTTCTCATACCGACGTGGCCTTCGCAGCGCCGGTGTAGAGTATATTAACGCTAAAGCT ACACTCCTCGCCGCCCCCGAGAGAGCCCAGTCGGGCGCCAAGTCTGGTCGAGTGGTGGAG TATACACTCAAGGGCGAGCGGAAGGAGGTGCGGGCGAAGTGTGTTTTGGTAGCCGTGGGT GGACGGCCGTACATTCCACGGGACGTTCCCGGTGCGGTTGAGTTGGCCGTGACGAGTGAT GACTTGTTTAGTTTATCGCGCGAGCCGAAGAAGACTTTGGTGGTGGGTGCGTCGTACATT GCACTAGAGTGCGCGGGGTTCCTGACACACCTGCGTTATGATGTAACCGTGTGTGTACGC TCCATAGTGCTTCGCGGTTTCGACCGACAGTGTGCGGAACACATCCAGTTGGTGATGAAG GAACAAGGCACCAAGTTCCTGGAACACGAACAAGTAGTGTCGCTACAACGCGTGGGCGAG CCGGATGTGGCCGCTAGCGACCTAGCCGGAGACCGTGGGGCGGATACGACGTCCAATACG ACCGCCGACGGTGGCGACAAGATCCTCGTCCGGTTCGCATCCGGACGCGAAGAAATGTTC GACACAGTGGTCTACGCCGTCGGGCGCCGCGCATGCACCCAAAGTCTCGGCTGCGAGGCC GCCGGCATCGCCATGCACCCCGCATCTGGCAAGATTGTGGTCGACGAGCTAGAGCAAACT TCCGCACCCGGTGTCTACGCCATTGGAGACGTCTGTCACGGCCGCCCGGAACTAACTCCC GTTGCCATCAAGGCCGGCGAATTGCTCGCCAGGCGCCTCTTTGGAGGCGCCAACGAACCC ATGGTTTACACAAATATACCCACGGTTGTCTTCACCCCAATAGAATATGGCTGCTGCGGA CTTTCTGAAGAAGATGCCATCACGAGATACGGTCAAGACAATATCGAGGTCAAAATCATC TGCAAGAAACCTGACAACAAAATCGTTGGCTATCACTGCATCGCCATGAACGCTGGAGAG ACAACGCAGGGTTACGCGTTGGCGCTGAAGTGTGGGTTGACCAAGGACGATTTGGACGCA GTCGTGGGTATCCACCCGACTGACGCAGAGTCGTTCCACTCAATGACGATCACTCGTCGC AGCGGC // gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise match 9967 11643 357.61 + . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 9967 11216 0.00 + 0 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise intron 11217 11324 0.00 + . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 11325 11385 0.00 + 1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise intron 11386 11508 0.00 + . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 11509 11643 0.00 + 0 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 // genewise output Score 18.68 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000080_1.0 336 STNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQR ST KN+ + D + HI + DVA T + + +L R STRFKNELVHADESAGVTARHILHLLDVAAHHDNRTLHVLDSQVVLVAR gi|338242564|gb-6653 aactaagcgcgggagggagacaccccggggccgacatcgcgacggcggc gcgtaaattacaagcgtccgattattatccaaaagctattagattttcg tcttgtagccccgcattcagccgcgcctgctttctggctttcacctgcg SPP00000080_1.0 385 LFGKS L+G++ LIGRT gi|338242564|gb-6506 cagca ttggc gacgc // >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).pep STRFKNELVHADESAGVTARHILHLLDVAAHHDNRTLHVLDSQVVLVARLIGRT // >gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).[6653:6490].sp AGTACCCGTTTTAAGAATGAACTGGTCCACGCCGACGAGAGCGCAGGTGTTACCGCAAGG CACATCCTGCACCTGCTCGACGTTGCGGCCCATCATGATAACCGTACGTTGCACGTTCTT GATAGCCAAGTCGTCCTTGTGGCCCGGCTGATAGGCCGGACC // gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise match 6653 6492 18.68 - . gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000) GeneWise cds 6653 6492 0.00 - 0 gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1 //