genewise output Score 18.55 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 137 PHRIKATNNKGKEK PH+ TN K KEK PHKHAETNQKAKEK TcIL3000_10_v2. 8309 ccacggaacagaga caaacacaaacaaa gtatgaccaaaaaa // >TcIL3000_10_v2.embl:subseq(2270638,21256).pep PHKHAETNQKAKEK // >TcIL3000_10_v2.embl:subseq(2270638,21256).[8309:8350].sp CCGCATAAACATGCGGAAACCAACCAAAAAGCAAAAGAAAAA // TcIL3000_10_v2.embl:subseq(2270638,21256) GeneWise match 8309 8350 18.55 + . TcIL3000_10_v2.embl:subseq(2270638,21256)-genewise-prediction-1 TcIL3000_10_v2.embl:subseq(2270638,21256) GeneWise cds 8309 8350 0.00 + 0 TcIL3000_10_v2.embl:subseq(2270638,21256)-genewise-prediction-1 // genewise output Score 226.60 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 13 YDLIIIGGGSGGLAAAKEAAQ-YGKKVMVLDFVTPTPLGTRWGLGGTCV +DL+IIG GSGGL A AA Y K+V V+D T LGGTCV FDLVIIGAGSGGLEAGWNAATLYKKRVAVVDVQTVHGPPFFAALGGTCV TcIL3000_10_v2.-2385 tgcgaagggtggcgggtaggactaacggggggcagcgccttggcggatg tattttgcgcggtacggaccctaaagtcttatactagccttcctggcgt ccctctcttaaagattgcctaacgatttgtcaacctaattctatccgtt SPP00000034_1.0 61 NVGCIPKKLMHQAALLGQALQDSRNYGWKVE-ETVKHDWDRMIEAVQNH NVGC+PKKLM A L++S +GW+ + T+K +W +I A NVGCVPKKLMVTGAQYMDQLRESAGFGWEFDASTIKANWKTLIAAKNAA TcIL3000_10_v2.-2238 aggtgcaacagaggctagcccgtggtgtgtggtaaagataataggaagg atggtcaatttcgcaataatgaccgtggataccctacagacttccaacc cgtcggggcgccgagcgtaacgtccccgattcaataacgaggaacgtgt SPP00000034_1.0 109 IGSLNWGYRVALREKK-VVYENAYGQFIGPHRIKATN-----NKGKEKI + +N Y ++ + + +G + + + K KE++ VLDINKSYEDMFKDTEGLEFFLGWGALEQKNVVTVREGADPKSKVKERL TcIL3000_10_v2.-2091 gtgaaaatggatagaggcgtttgtggtgcaaggagcggggcaaagagcc ttataagaaattaacagtatttgggctaaaattctgagcacagataagt agcacactacgcatagttgctgtgaaggaatacctcatacgataggact SPP00000034_1.0 152 YSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASY AE ++IATG P+ L IPG E+CISS++ F L P + L VG + -QAEHIIIATGSWPQMLKIPGI-EHCISSNEAFYLEEPPRRVLTVGGGF TcIL3000_10_v2.-1944 cggcaaagagttccacaacga gctaaaaggttcggccccgtaggggt acaatttccgcgcattatcgt aagtggaactataaccggttctgggt gggcccagccagaggtgtcct gccacttagccgaatcttggctcttt SPP00000034_1.0 201 VALECAGFLAG---IGLDVTVMVRSI-LLRGFDQDMANKIGEHMEEHGI +++E AG+ +G VT+ R+ +LRGFD + ++ + + +GI ISVEFAGIFNAYKPVGGKVTLCYRNNPILRGFDYTLREELTKQLVANGI TcIL3000_10_v2.-1803 atggtggatagtacgggagacttcaacaccgtgtaccggcaaccggaga tctatcgttacaactggatctgagaacttggtaactgaatcaattcagt tctgttttttacacgtcgaaacccctctttatccgtcagcgagcttttt SPP00000034_1.0 246 KFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD ++ P K IE G V +S + ++ VM+AIGR DIMTNENPSK---IELNPDGSKHVTFESGKTLDV-----DVVMMAIGRL TcIL3000_10_v2.-1656 gaaaagacta agcacggtacgatgagaatgg gggaagagcc attcaaacca tatacagcaatctaggactat attttctggt ccgatacccg tactttgtatcctactgagtg ctcggatttt SPP00000034_1.0 295 ACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELT T + L+TVGV + +K G I V + +TNVP IYAIGD+ ++ LT PRTGDLQLQTVGVNLTDK-GAIQVDEFSRTNVPNIYAIGDVT-GRIMLT TcIL3000_10_v2.-1533 ccaggtctcagggacaga ggacgggttcaagcaatgaggga gcaaca cgcgatatactgtatcaa gctataatcgcatcatactgatc ggtttc cctacggggtcaacctcg ttaagcgtttccaccccatgtag tttggt SPP00000034_1.0 344 PVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVE PVAI G + ++ K D+ V + VF+ G CGL+EE+A + PVAINEGASVVDTIFGSKPRKTDHTRVASAVFSIPPIGTCGLTEEEAAK TcIL3000_10_v2.-1392 cggaagggagggaatgaaccaagcacggaggttaccagatgcaggggga ctctaagcgttacttggacgacaacgtcgcttctcctgcggtcaaacca ggtttgactcatctttcgggattctttctcacctcataattctaaggag SPP00000034_1.0 393 KFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVL F E + VY S F PL I K AKII + D VVG H+L SF--EKVAVYLSCFTPLMHNISGSKYKKFVAKIITDHGDG-TVVGVHLL TcIL3000_10_v2.-1245 at gagggtctttaccacaaagtataatggaaaagcggg aggggccc gt aatctatcgtccttaatggcaaaattcattcaagag cttgtatt tt agtgtctattcaagctctgaacagtgggtcatcttg agttgctt SPP00000034_1.0 442 GPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE G ++ E+ Q +K +TIG+HP AE GDSSPEIIQAVGICMKLNAKISDFYNTIGVHPTSAE TcIL3000_10_v2.-1107 ggatcgaacgggataacagaaagttaaaggccaagg gagccattactgtgtatacatgataactgtaccgca gctaaaccatttccgattagatctcctttgcgacaa // >TcIL3000_10_v2.embl:subseq(2270638,21256).pep FDLVIIGAGSGGLEAGWNAATLYKKRVAVVDVQTVHGPPFFAALGGTCVNVGCVPKKLMV TGAQYMDQLRESAGFGWEFDASTIKANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFL GWGALEQKNVVTVREGADPKSKVKERLQAEHIIIATGSWPQMLKIPGIEHCISSNEAFYL EEPPRRVLTVGGGFISVEFAGIFNAYKPVGGKVTLCYRNNPILRGFDYTLREELTKQLVA NGIDIMTNENPSKIELNPDGSKHVTFESGKTLDVDVVMMAIGRLPRTGDLQLQTVGVNLT DKGAIQVDEFSRTNVPNIYAIGDVTGRIMLTPVAINEGASVVDTIFGSKPRKTDHTRVAS AVFSIPPIGTCGLTEEEAAKSFEKVAVYLSCFTPLMHNISGSKYKKFVAKIITDHGDGTV VGVHLLGDSSPEIIQAVGICMKLNAKISDFYNTIGVHPTSAE // >TcIL3000_10_v2.embl:subseq(2270638,21256).[2385:998].sp TTCGACCTCGTTATCATTGGCGCTGGTTCAGGAGGACTGGAAGCTGGTTGGAACGCCGCT ACACTATACAAGAAACGTGTTGCTGTGGTTGACGTACAAACCGTCCATGGACCACCTTTT TTCGCTGCACTTGGCGGCACGTGTGTTAACGTGGGTTGCGTGCCGAAGAAGCTCATGGTC ACCGGGGCACAGTACATGGATCAACTACGCGAGTCTGCCGGCTTCGGCTGGGAATTTGAT GCCTCAACAATTAAAGCAAACTGGAAAACGTTGATAGCAGCCAAGAATGCGGCTGTATTG GACATAAACAAAAGCTATGAAGACATGTTCAAAGATACAGAGGGTCTTGAGTTCTTTTTG GGTTGGGGAGCATTGGAGCAAAAAAATGTAGTCACCGTTCGCGAAGGTGCAGACCCGAAA AGTAAAGTGAAGGAACGCCTTCAGGCGGAGCACATCATCATAGCGACCGGCTCATGGCCA CAGATGCTTAAGATTCCCGGCATTGAGCACTGCATAAGCAGTAATGAAGCGTTCTACCTG GAAGAACCTCCCCGTCGTGTGTTGACCGTTGGCGGTGGTTTTATTTCCGTTGAGTTTGCT GGTATTTTTAATGCATACAAACCCGTGGGTGGCAAGGTAACACTATGCTACCGCAACAAT CCCATTCTTCGTGGATTTGACTACACGCTTCGCGAAGAGCTCACGAAACAGCTCGTTGCT AATGGTATTGACATCATGACAAATGAAAACCCCTCCAAGATTGAACTCAATCCTGATGGG TCTAAACATGTCACCTTTGAAAGCGGTAAGACATTGGATGTGGACGTTGTCATGATGGCA ATTGGTCGTCTTCCCCGCACTGGAGACTTGCAGTTGCAGACTGTCGGAGTAAACCTCACT GACAAGGGTGCTATACAAGTGGACGAGTTTTCTCGTACCAACGTACCCAACATCTACGCA ATTGGGGATGTAACGGGTCGTATTATGCTGACTCCGGTGGCTATTAATGAGGGAGCCAGT GTCGTAGATACCATTTTTGGTAGCAAGCCGCGGAAAACTGATCACACTCGTGTTGCCAGT GCCGTATTCTCCATTCCCCCAATTGGAACATGTGGTCTCACTGAAGAAGAGGCGGCAAAG AGTTTTGAAAAGGTTGCGGTTTACCTTTCATGTTTTACCCCACTAATGCACAATATCAGT GGGTCAAAATACAAAAAGTTTGTGGCGAAGATTATCACAGATCACGGTGATGGGACAGTG GTTGGTGTGCACCTTCTTGGGGACAGTTCACCAGAAATCATCCAAGCTGTTGGTATCTGC ATGAAACTTAATGCAAAGATAAGTGACTTTTACAACACTATTGGTGTGCACCCGACAAGC GCAGAA // TcIL3000_10_v2.embl:subseq(2270638,21256) GeneWise match 2385 1000 239.58 - . TcIL3000_10_v2.embl:subseq(2270638,21256)-genewise-prediction-1 TcIL3000_10_v2.embl:subseq(2270638,21256) GeneWise cds 2385 1000 0.00 - 0 TcIL3000_10_v2.embl:subseq(2270638,21256)-genewise-prediction-1 //