genewise output Score 394.38 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 8 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLG P YD D I+IGGGSGG+AAAKEAA+ G KV + D+V P+ GT+WGLG PSQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLG supercont1.675: 1966 ctctgggtagagggtggagggagggaaggaggctgtgactacgactgtg ccaaatattttgggcggtcccaaccaagcatcttaatacccagcaggtg gtacttcccccatctttgatcaaatactaagcttccggataaatagtga SPP00000034_1.0 57 GTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE-ETVKHDWD GTCVNVGC+PKK+MH A L + D++ GW+VE ++KHDW GTCVNVGCVPKKIMHYAGLQAINMHDAQALGWQVEADSIKHDWT supercont1.675: 2113 gatgaggtgcaaaactggtcgaaacggcgcgtcggggaaacgta gcgtatggtcaattaacgtactataacactggatacagtaaagc tccgtattggggcgccttagtctgcccggggggaggttcgccga SPP00000034_1.0 100 MIEAVQNHIGSLNWGYRVALREK ++E VQNH+GSLNWGY++ LR R:T[act] LVETVQNHVGSLNWGYKLGLRSN supercont1.675: 2245 AGTATGTT Intron 1 CAGCTcggagcacggttatgtatgccta <1-----[2246 : 4111]-1> ttactaaatgctaggaatgtgca cgatagccggggtgctagcagcc SPP00000034_1.0 124 KVVYENAYGQFIGPHR KATNNKG KV Y NA FI H T KG KVNYINATAAFIDAHT I:V[gtc] TYTL-KG supercont1.675: 4183 agataagaggtaggcaGGTATGCA Intron 2 CAGTCatac ag ataataccccttacac <1-----[4232 : 4972]-1> cact ag gcccccccggtctgct tctc gt SPP00000034_1.0 148 KEKIYSAERFLIATGERPRYL-GIPGDKEYCIS EK SA +LIA G RP IPG E+ I+ VEKTLSAANLLIAVGGRPVIPESIPGALEHAIT supercont1.675: 4993 ggaactggaccaggggacgacgtacggcgcgaa taactcccatttctgggcttcactcgctaactc tagttgggtggtcttagcccgagagatcgtcta SPP00000034_1.0 180 DDLFSLPYCPGKTLVVGASYVAL DD+FSL PG+TL VGASY++L S:S[agc] DDIFSLYTSPGRTLCVGASYISL supercont1.675: 5092 AGGTGAGTT Intron 3 CAGCggattctatcgaactgggatatc <2-----[5094 : 5451]-2> aattctacccggctgtgcgatct ctccgctgcgagtacaccctctc SPP00000034_1.0 204 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV EC GFL +G +V V +RSI LRGFD+ + K+ + M++ G+ F +Q+V ECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHKQYV supercont1.675: 5522 gtggtcagcgtgggggaaaacccgtgcctagagggcagacggatcactg agggttaatgaatatctggtctggtagaggaatcattaatgtctaaaat gtcgtcgacatggcgcgattagtctcagctggggctgcggtgcccggcc SPP00000034_1.0 253 PIKVEQIEA TPGRLRVVAQSTNS P +++ + L V T + PSLIKKTSS G:G[ggt] D---LEVTMTHTVT supercont1.675: 5669 ctcaaaattGGTAAGGT Intron 4 CAGGTg tggaaacaga ccttaaccc <1-----[5697 : 6584]-1> a tatctcactc gggcggcaa c ggtcgacccc SPP00000034_1.0 277 EEIIEGEYNTVMLAIGRDACTRKIGLE E I YNTVM A GR A T + L NEEIVKSYNTVMFATGRRADTDGLNLA T:A[gct] supercont1.675: 6620 aggagattaagatgagccggaggcacgGGTAGGTG Intron 5 aaattacaactttccgggcacagtatc <1-----[6702 : 7084] tggcgggccgtgcccccagcttttcgt SPP00000034_1.0 304 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQ G+ GK+ + T+V +IYAIGD +++ ELTPVA+Q AGLSALP-NGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQ supercont1.675: 7082 CAGCTggtagcc agacgagtgggatgtcatgaggtgcgacgcacgggc -1> cgtgctc agatccaacatcctcatactgagcaagcatcctcta ctgttac tagctaccctggcagccccatctaaagtagtcacta SPP00000034_1.0 349 AGRLLAQRLYAGSTVKC DYENVPTTV AG+ LA+R++ GS+ DY+ V T V AGQYLARRVFGGSSKNM DYKMVATAV supercont1.675: 7216 ggctcgcagtggttaaaGTACGTT Intron 6 CAGgtaaggagg cgaatcggttggccaat<0-----[7267 : 8334]-0>aaattccct cagcttcagttaacgtg ccggacgcg SPP00000034_1.0 375 FTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI FTP EYGA G SEE A+ FGE+ IEVY F LE FTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGA supercont1.675: 8362 tactgtggggtaggggtaatggggaggtctgtaacgggg tcctaagctgagaaactcctgaactatattatcctacgc cgctgcgggactggtcgcctcatgtaatacacaggggcc SPP00000034_1.0 414 PSRD-NNKCYAKIICNTKDNERVVGF D + C AK++C +NERVVGF YDADFGDTCLAKLVCLKNENERVVGF supercont1.675: 8479 GTACATC Intron 7 GAGtgggtggatcgacgtcaagagcgggt <0-----[8479 : 9197]-0>aacatgacgtcattgtaaaaagttgt ctcctctacgtgggtcgtgcagttcc SPP00000034_1.0 439 HVLGPNAGEVTQ FAAALKCGLTK H +GPNAGE+TQ +A ALK G+TK HFIGPNAGEITQ G:G[ggt] YALALKAGVTK supercont1.675: 9276 ctagcagggaacGGTACGAC Intron 8 CAGGTtgcgcagggaa attgcacgatca <1-----[9313 :10000]-1> actctacgtca tctctccagcta ttgccagtgga SPP00000034_1.0 463 KQLDSTIGIHPVCAEVFTTLSVTKRSGAS-ILQAGCXG D T+GIHP AE F L +T+RSG S + + GC G AMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG supercont1.675:10036 gatggaggaccagggttcgcgaaacagattgggggtgg cttaactgtaccacactactatcggggacgtcaggggg cgctctatctgtctggctgggcgactcgcgttacctat // Making a T in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a G in phase 1 intron >supercont1.675:subseq(5523,20149).pep PSQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPK KIMHYAGLQAINMHDAQALGWQVEADSIKHDWTTLVETVQNHVGSLNWGYKLGLRSNKVN YINATAAFIDAHTVTYTLKGVEKTLSAANLLIAVGGRPVIPESIPGALEHAITSDDIFSL YTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVT FHKQYVPSLIKKTSSGDLEVTMTHTVTNEEIVKSYNTVMFATGRRADTDGLNLAAAGLSA LPNGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKNMDYKMV ATAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGAYDADFGDTCLAKLVCLK NENERVVGFHFIGPNAGEITQGYALALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSG KSWVAEGGCGG // >supercont1.675:subseq(5523,20149).[1966:10149].sp CCGTCTCAATACGATGTTGACTTCATCGTCATCGGAGGTGGCTCTGGTGGTATGGCAGCT GCCAAAGAAGCAGCTAAAAACGGTGCAAAAGTGGCCCTTTTTGACTACGTGAAGCCATCT ACACAAGGAACTCAATGGGGTTTGGGAGGTACCTGCGTGAATGTAGGTTGTGTGCCGAAG AAGATCATGCACTACGCTGGTTTACAGGCTATCAATATGCACGACGCCCAGGCGCTGGGG TGGCAGGTAGAGGCGGATAGTATCAAGCACGACTGGACAACTCTCGTGGAAACTGTACAG AACCACGTGGGGTCGTTGAATTGGGGCTATAAATTGGGCCTACGGTCCAACAAGGTCAAC TACATCAACGCCACCGCGGCGTTTATCGATGCGCACACTGTCACTTACACTCTCAAGGGT GTTGAAAAGACTCTTTCGGCGGCGAATCTGCTGATTGCCGTTGGTGGAAGGCCCGTCATC CCGGAATCGATACCGGGAGCTCTCGAGCATGCCATTACAAGCGACGATATCTTCTCGCTC TATACGTCCCCGGGAAGGACTCTATGCGTAGGCGCCAGCTATATCTCTCTCGAGTGTGGC GGGTTTCTCAAGGAACTCGGATATGAGGTGGACGTGGCCATGAGAAGTATTCCACTGCGT GGCTTTGACCGACAGTGCAGTGAGAAGGTGGCGGACCTTATGGACAAGCTGGGTGTGACC TTCCACAAGCAGTACGTCCCGTCGCTGATCAAGAAGACCTCATCAGGTGACTTGGAGGTT ACCATGACACACACCGTCACCAATGAGGAGATCGTGAAGTCGTACAACACGGTTATGTTC GCCACCGGCCGCCGAGCGGACACTGATGGTCTTAACCTGGCTGCTGCCGGTTTGAGTGCT CTACCCAATGGAAAGCTCGCTACAGACTACGCCGATGTGACGTCCGTATCGCACATCTAC GCCATAGGTGACTGTGCACAAGAAAGGCCTGAACTGACTCCCGTAGCCGTTCAAGCCGGA CAGTACCTTGCTCGCAGAGTGTTTGGTGGATCATCCAAGAATATGGACTACAAGATGGTA GCCACGGCCGTGTTCACGCCCTTTGAGTACGGGGCGGTGGGATACAGTGAGGAGGATGCC TTGACCACCTTTGGCGAAGATGCGATTGAAGTATATCTATTCGAATTCACAACGCTGGAG GCGGGCGCCTACGATGCCGACTTTGGCGATACATGCCTGGCTAAGCTGGTGTGTCTCAAG AATGAGAACGAACGGGTTGTTGGCTTCCATTTCATTGGCCCTAACGCCGGAGAGATCACT CAAGGTTATGCTCTGGCCCTCAAAGCGGGTGTGACGAAAGCCATGTTCGATGACACTGTA GGTATCCATCCGACTGACGCTGAGTCGTTCCATGCGCTGGAGATCACGAGACGCAGTGGC AAGTCCTGGGTTGCTGAAGGCGGCTGTGGAGGT // supercont1.675:subseq(5523,20149) GeneWise match 1966 10149 396.37 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 1966 2245 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 2246 4111 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4112 4231 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 4232 4972 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4973 5093 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5094 5451 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 5452 5696 0.00 + 1 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5697 6584 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 6585 6701 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 6702 7084 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 7085 7266 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 7267 8334 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 8335 8478 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 8479 9197 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 9198 9312 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 9313 10000 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 10001 10149 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 // genewise output Score 16.20 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 277 EEIIEGEYNTVMLAIGRDACTRKIGL E+I+ G Y T GRD +R +G+ EDIVAGGYGT-RGGWGRDEVSRGVGM supercont1.675:-5464 ggaggggtga cggtgagggaaggga aattcggagc ggggggaatgggtgt atccttgtcg tgggtatattacgtg // >supercont1.675:subseq(5523,20149).pep EDIVAGGYGTRGGWGRDEVSRGVGM // >supercont1.675:subseq(5523,20149).[5464:5388].sp GAAGATATCGTCGCTGGTGGGTATGGCACGCGTGGGGGGTGGGGTAGAGATGAAGTTAGT AGAGGCGTGGGTATG // supercont1.675:subseq(5523,20149) GeneWise match 5464 5390 16.20 - . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 5464 5390 0.00 - 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 //