genewise output Score 15.79 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 376 TPLEYGACGLS TP +Y AC L+ TPADYTACALT PHYCAscaffold_818485 acggtagtgta cccaaccgctc gtcccggttgg // >PHYCAscaffold_84:subseq(86261,21487).pep TPADYTACALT // >PHYCAscaffold_84:subseq(86261,21487).[18485:18517].sp ACGCCTGCCGACTACACGGCGTGTGCTTTGACG // PHYCAscaffold_84:subseq(86261,21487) GeneWise match 18485 18517 15.79 + . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 18485 18517 0.00 + 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 // genewise output Score 577.97 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 10 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGT +YDYDL++IGGGSGGLA +KEAA +G+KV VLD+V P+P GT WGLGGT NYDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGT PHYCAscaffold_-11478 atgtgcggagggtggcgttagggttgcagtgcgtgactccgattgcgga aaaaattttgggcggtcgcaaccctgaatgttaatacccagccggtggc cccctaggtccatacgcccgagctctggctaacccgggtgcgtgtagcg SPP00000034_1.0 59 CVNVGCIPKKLMHQAALLGQALQ-DSRNYGWKVEE----TVKHDWDRMI CVNVGCIPKKLMHQ++L+G+ + D N+GW + +W +++ CVNVGCIPKKLMHQSSLIGEVIHHDGANFGWNLSSGDGNAPTFNWKQLV PHYCAscaffold_-11331 tgaggtacaacaccatcagggaccgggatgtacttgggagcatatactg gtatggtcaattaagcttgattaaagcatggatccgagaccctagaatt tctcccccggcgcactatcgccctcctctcgttgtgtactattcggggg SPP00000034_1.0 103 EAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKI V +I S+N+ Y+V LR K V YEN G F+ PH ++ + + K SNVDGYIKSINFKYKVELRSKYVKYENFLGSFVNPHTLELWHPRKGTKQ PHYCAscaffold_-11184 tagggtaaaaatataggccaatgatgatcgttgaccatgttcccagaac catagatagtataaatatggaataaaattgcttacactatgacgagcaa gcgcgccaccccgcgggactgctgcgccgctctcccaggggctcgcagg SPP00000034_1.0 152 YSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYC-PGKTLVVGAS + +IA G RP+ L PG E+ ISSDD+F + PGKTLVVGAS ITTRDVVIAVGGRPKELTCPGG-EHAISSDDIFWMKKKEPGKTLVVGAS PHYCAscaffold_-11037 aaacgggaggggccagtatcgg gcgataggattaaaagcgaacggggt tccgatttctgggcaatcgcgg aactcgaattgtaaaacgactttgcc ctattgctttttacgggctata gtgtgtcttcgggaggacgttgtccg SPP00000034_1.0 200 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME-EHGIKF YVALECAGFL G+G DV VMVRSILLRGFDQDMA+KIGE+ME GI+F YVALECAGFLKGMGYDVKVMVRSILLRGFDQDMADKIGEYMEVQSGIEF PHYCAscaffold_-10893 tggcgtggtcagagtggagagctatccgtgcgaggaaggtaggctgagt atctagcgttagtgaatatttgctttggtaaatcaatgaatatacgtat cgcggtaccggcgcctggggcactgttcccgcgccgtcgcggggattgc SPP00000034_1.0 248 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC IR+ VP + ++E G +V ++ E E ++TV+ A GRD IRKTVPQSITKLENGQ----LLVKWTSEDGESCEEAFDTVLNATGRDPD PHYCAscaffold_-10746 acaagcctaaacgagc ccgataaggggatgggtgagcagagcgcg tgactcactcataaga tttagcgaagaggaactacttaccggaca tggaaggccgacgctg cgaggacacagttgatcttgtcttctttt SPP00000034_1.0 297 TRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPV K+ L+ GVK+NEK+G+I V +E QT+ P IYAIGD++ D ELTPV VAKLNLDKAGVKLNEKSGRIWVKNE-QTSTPNIYAIGDVI-DAPELTPV PHYCAscaffold_-10611 ggacacgagggacagatgcatgaag catacaatgaggga ggcgcacg tcatataacgtataaacggtgtaaa accccatactgatt accatcct ggggcgcgtagggtggtaccgggcg ggggcctccttttc cgaacgtc SPP00000034_1.0 346 AIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKF AIQAGRLL++RLY STV+ DYE V T VFTP+EYG CG+SEE + E+F AIQAGRLLSRRLYNNSTVQMDYEKVCTAVFTPIEYGCCGMSEEDSKERF PHYCAscaffold_-10470 gacggctctccttaatagcagtgagtaggtacagtgttgatgggaagct ctacggttcggtaaacctataaaatgccttcctaaggggtcaaagaagt ctgtaagtgttgctcgggggccgggcaagtttcgcgctcggggccagct SPP00000034_1.0 395 GEENIEVYHSYFWPLEWTIPSRDN---NKCYAKIICNTKDNERVVGFHV GE+NIEVYH+ F PLEW++ + CY K+IC+ ++ VVGFH GEDNIEVYHTNFVPLEWSLSTDTRTAAESCYLKVICDKTRDKFVVGFHY PHYCAscaffold_-10323 gggaaggtcaatgccgttttagacagggttttagatgaacgatgggtct gaaatataacattctagctccacgcccacgatattgaacgaatttgtaa agcccgtccgctgggggggggcgcaaaggtcgggctcagttgcggcctc SPP00000034_1.0 441 LGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSG LGPNAGEVTQ + A+K G T Q+ T+GIHP AE FTTL VTK SG LGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIHPTTAESFTTLEVTKSSG PHYCAscaffold_-10176 cgcaggggacgagtgaatgtatgcaggaggaccaaggttaacggaaaag tgcacgatcactgtctatgtcaaattactgtaccccactcctatcaggg tagttcggtacgggcgggccgccagttccctcgggcggcgtgggggctt SPP00000034_1.0 490 ASILQAGC + GC GATTGGGC PHYCAscaffold_-10029 ggaagggt gcccgggg agctcgtc // >PHYCAscaffold_84:subseq(86261,21487).pep NYDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKL MHQSSLIGEVIHHDGANFGWNLSSGDGNAPTFNWKQLVSNVDGYIKSINFKYKVELRSKY VKYENFLGSFVNPHTLELWHPRKGTKQITTRDVVIAVGGRPKELTCPGGEHAISSDDIFW MKKKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMADKIGEYMEVQS GIEFIRKTVPQSITKLENGQLLVKWTSEDGESCEEAFDTVLNATGRDPDVAKLNLDKAGV KLNEKSGRIWVKNEQTSTPNIYAIGDVIDAPELTPVAIQAGRLLSRRLYNNSTVQMDYEK VCTAVFTPIEYGCCGMSEEDSKERFGEDNIEVYHTNFVPLEWSLSTDTRTAAESCYLKVI CDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIHPTTAESFTTLEVTK SSGGATTGGGC // >PHYCAscaffold_84:subseq(86261,21487).[11478:10004].sp AACTACGACTACGATCTAGTGGTGATTGGCGGCGGATCTGGAGGCCTGGCCTGCTCCAAG GAAGCGGCCTCTTTCGGTCAGAAGGTCTGTGTACTAGACTACGTCAAGCCGTCGCCTCAG GGCACGTCTTGGGGTCTAGGGGGCACGTGTGTCAATGTCGGCTGCATCCCCAAGAAGCTC ATGCACCAAAGCTCTCTAATTGGCGAGGTCATCCACCATGACGGCGCTAACTTTGGCTGG AATCTTTCGTCTGGGGATGGAAACGCTCCAACTTTTAACTGGAAGCAGTTGGTGTCGAAC GTGGACGGGTACATCAAAAGCATCAACTTCAAGTACAAGGTGGAGCTACGCAGTAAGTAC GTTAAGTACGAGAACTTCCTGGGCTCTTTCGTTAACCCCCACACATTGGAGTTGTGGCAC CCTCGCAAGGGCACAAAGCAGATCACTACACGTGATGTGGTCATTGCTGTTGGTGGTCGA CCCAAGGAGTTGACCTGTCCAGGTGGAGAGCATGCGATTTCGAGTGACGATATTTTCTGG ATGAAGAAAAAGGAGCCAGGCAAGACTCTTGTGGTTGGCGCCTCGTACGTGGCCCTGGAG TGTGCAGGCTTCCTGAAGGGCATGGGCTACGATGTGAAGGTGATGGTCCGATCCATTTTG CTTCGTGGCTTCGACCAGGACATGGCCGACAAGATTGGCGAGTACATGGAGGTGCAGTCA GGTATTGAGTTCATTCGGAAGACAGTACCGCAGTCCATCACGAAACTCGAGAACGGTCAG CTCCTGGTAAAGTGGACAAGCGAAGACGGAGAGAGTTGTGAGGAAGCTTTCGATACTGTG CTTAACGCTACTGGCCGTGATCCTGATGTGGCGAAGCTGAACCTGGACAAGGCTGGAGTG AAGCTGAATGAGAAGTCTGGACGCATCTGGGTGAAGAACGAGCAGACGTCGACGCCCAAC ATTTACGCCATTGGTGATGTTATCGACGCGCCAGAACTCACGCCTGTCGCCATTCAGGCT GGACGATTGCTTTCGCGTCGTTTGTACAATAACTCGACGGTGCAGATGGACTACGAGAAG GTGTGCACAGCAGTGTTTACTCCTATCGAGTACGGGTGCTGTGGCATGTCGGAGGAGGAC AGCAAAGAGCGCTTTGGAGAGGACAACATCGAGGTTTACCACACGAACTTTGTGCCGCTG GAGTGGTCGTTGTCGACGGACACGCGCACAGCAGCAGAGTCGTGTTACTTGAAGGTGATC TGTGACAAAACGCGTGATAAGTTCGTGGTGGGCTTCCATTACCTTGGACCGAATGCTGGC GAGGTGACTCAAGCCATGGGGTTGGCCATGAAGTTGGGCTTCACGTACGACCAAATGGTT GATACCGTCGGCATTCACCCGACGACGGCCGAGTCGTTCACGACTCTGGAGGTGACGAAG AGCAGTGGTGGAGCGACCACTGGCGGGGGTTGC // PHYCAscaffold_84:subseq(86261,21487) GeneWise match 11478 10006 585.96 - . PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 PHYCAscaffold_84:subseq(86261,21487) GeneWise cds 11478 10006 0.00 - 0 PHYCAscaffold_84:subseq(86261,21487)-genewise-prediction-1 //