genewise output Score 340.89 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|323451867|gb 12 FDYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTC +D D +V+GGGSGG+A +KE AK GAKVA+ D+VKPS G+ WGLGGTC YDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTC supercont1.675: 1975 tgggtagagggtggagggagggaaggaggctgtgactacgactgtggat aatattttgggcggtcccaaccaagcatcttaatacccagcaggtggcg cttcccccatctttgatcaaatactaagcttccggataaatagtgatcc gi|323451867|gb 61 VNVGCIPKKLMHTASIIGETLKDDAAAFGWK-DAAAGAHDWE VNVGC+PKK+MH A + + DA A+GW+ A + HDW VNVGCVPKKIMHYAGLQAINM-HDAQALGWQVEADSIKHDWT supercont1.675: 2122 gaggtgcaaaactggtcgaaa cggcgcgtcggggaaacgta tatggtcaattaacgtactat aacactggatacagtaaagc gtattggggcgccttagtctg cccggggggaggttcgccga gi|323451867|gb 102 MKSTVQDHIKSLNFKYRVALREA + TVQ+H+ SLN+ Y++ LR S:T[act] LVETVQNHVGSLNWGYKLGLRSN supercont1.675: 2245 AGTATGTT Intron 1 CAGCTcggagcacggttatgtatgccta <1-----[2246 : 4111]-1> ttactaaatgctaggaatgtgca cgatagccggggtgctagcagcc gi|323451867|gb 126 GITYLNRLGEFEDKNT SLTDKKG + Y+N F D +T + T KG KVNYINATAAFIDAHT I:V[gtc] TYT-LKG supercont1.675: 4183 agataagaggtaggcaGGTATGCA Intron 2 CAGTCata cag ataataccccttacac <1-----[4232 : 4972]-1> cac tag gcccccccggtctgct tct cgt gi|323451867|gb 150 NKTSVTAARFIVAVGGRPN-KLGCPGG-EHAID + +++AA +++AVGGRP PG EHAI VEKTLSAANLLIAVGGRPVIPESIPGALEHAIT supercont1.675: 4993 ggaactggaccaggggacgacgtacggcgcgaa taactcccatttctgggcttcactcgctaactc tagttgggtggtcttagcccgagagatcgtcta gi|323451867|gb 181 DDLFSLPKAPGRVLCVGGGYIAL DD+FSL +PGR LCVG YI+L S:S[agc] DDIFSLYTSPGRTLCVGASYISL supercont1.675: 5092 AGGTGAGTT Intron 3 CAGCggattctatcgaactgggatatc <2-----[5094 : 5451]-2> aattctacccggctgtgcgatct ctccgctgcgagtacaccctctc gi|323451867|gb 205 ECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVT ECGGF +GY +RSI LRGFDR+C K+ + GV ECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHKQYV supercont1.675: 5522 gtggtcagcgtgggggaaaacccgtgcctagagggcagacggatcactg agggttaatgaatatctggtctggtagaggaatcattaatgtctaaaat gtcgtcgacatggcgcgattagtctcagctggggctgcggtgcccggcc gi|323451867|gb 254 PAKIEKDAA ----TGVLTVTDSG P+ I+K ++ T TVT+ PSLIKKTSS -:G[ggt] DLEVTMTHTVTNEE supercont1.675: 5669 ctcaaaattGGTAAGGT Intron 4 CAGGTgtggaaacagaagg ccttaaccc <1-----[5697 : 6584]-1> atatctcactcaaa gggcggcaa cggtcgacccctgg gi|323451867|gb 273 GGVHEYDTVLVATGRYADTAALGID V Y+TV+ ATGR ADT L + -IVKSYNTVMFATGRRADTDGLNLA N:A[gct] supercont1.675: 6629 agattaagatgagccggaggcacgGGTAGGTG Intron 5 ttacaactttccgggcacagtatc <1-----[6702 : 7084] cgggccgtgcccccagcttttcgt gi|323451867|gb 298 VPGASANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPV G SA N KL + H+YAIGD + RPELTPV A-GLSALPNG---KLATDYADVTSVSHIYAIGDCAQERPELTPV supercont1.675: 7082 CAGCTg gtagccag acgagtgggatgtcatgaggtgcgacgcacg -1> c gtgctcag atccaacatcctcatactgagcaagcatcct c tgttacta gctaccctggcagccccatctaaagtagtca gi|323451867|gb 343 AIEAGLRLARRLFGGKTEPM DYECVA A++AG LARR+FGG ++ M DY+ VA AVQAGQYLARRVFGGSSKNM DYKMVA supercont1.675: 7207 ggcggctcgcagtggttaaaGTACGTT Intron 6 CAGgtaagg ctacgaatcggttggccaat<0-----[7267 : 8334]-0>aaattc ctacagcttcagttaacgtg ccggac gi|323451867|gb 369 TTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLE---------- T +FTP EYG +G SE+DA GE +E Y+ EF LE TAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGAVHRKKHP supercont1.675: 8353 aggtactgtggggtaggggtaatggggaggtctgtaacgggggccaacc ccttcctaagctgagaaactcctgaactatattatcctacgctagaaac gcgcgctgcgggactggtcgcctcatgtaatacacaggggccatcggcc gi|323451867|gb 408 - ALSETRSERGDGCFAKLVVDKS E ++ GD C+AKLV K+ S Y:R[cgc] IADEYDADFGDTCLAKLVCLKN supercont1.675: 8500 tCGTATGTA Intron 7 TAGGCagggtgggtggatcgacgtcaa c <1-----[8504 : 9183]-1> tcaaaacatgacgtcattgtaa c tgcgctcctctacgtgggtcgt gi|323451867|gb 431 TG-KVVGFHYLGPNAGEITQ FSI VVGFH++GPNAGEITQ +++ ENERVVGFHFIGPNAGEITQ G:G[ggt] YAL supercont1.675: 9252 gagcgggtctagcagggaacGGTACGAC Intron 8 CAGGTtgc aaagttgtattgcacgatca <1-----[9313 :10000]-1> act gcagttcctctctccagcta ttg gi|323451867|gb 454 AMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSGES-AAKGGCXG A++ G T A F TVGIHPT AE F ++ +T+ SG+S A+GGC G ALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG supercont1.675:10012 gcagggaagatggaggaccagggttcgcgaaacagattgggggtgg ctacgtcacttaactgtaccacactactatcggggacgtcaggggg ccagtggacgctctatctgtctggctgggcgactcgcgttacctat // Making a T in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a R in phase 1 intron Making a G in phase 1 intron >supercont1.675:subseq(5523,20149).pep YDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKKIM HYAGLQAINMHDAQALGWQVEADSIKHDWTTLVETVQNHVGSLNWGYKLGLRSNKVNYIN ATAAFIDAHTVTYTLKGVEKTLSAANLLIAVGGRPVIPESIPGALEHAITSDDIFSLYTS PGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHK QYVPSLIKKTSSGDLEVTMTHTVTNEEIVKSYNTVMFATGRRADTDGLNLAAAGLSALPN GKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKNMDYKMVATA VFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGAVHRKKHPSRIADEYDADFGD TCLAKLVCLKNENERVVGFHFIGPNAGEITQGYALALKAGVTKAMFDDTVGIHPTDAESF HALEITRRSGKSWVAEGGCGG // >supercont1.675:subseq(5523,20149).[1975:10149].sp TACGATGTTGACTTCATCGTCATCGGAGGTGGCTCTGGTGGTATGGCAGCTGCCAAAGAA GCAGCTAAAAACGGTGCAAAAGTGGCCCTTTTTGACTACGTGAAGCCATCTACACAAGGA ACTCAATGGGGTTTGGGAGGTACCTGCGTGAATGTAGGTTGTGTGCCGAAGAAGATCATG CACTACGCTGGTTTACAGGCTATCAATATGCACGACGCCCAGGCGCTGGGGTGGCAGGTA GAGGCGGATAGTATCAAGCACGACTGGACAACTCTCGTGGAAACTGTACAGAACCACGTG GGGTCGTTGAATTGGGGCTATAAATTGGGCCTACGGTCCAACAAGGTCAACTACATCAAC GCCACCGCGGCGTTTATCGATGCGCACACTGTCACTTACACTCTCAAGGGTGTTGAAAAG ACTCTTTCGGCGGCGAATCTGCTGATTGCCGTTGGTGGAAGGCCCGTCATCCCGGAATCG ATACCGGGAGCTCTCGAGCATGCCATTACAAGCGACGATATCTTCTCGCTCTATACGTCC CCGGGAAGGACTCTATGCGTAGGCGCCAGCTATATCTCTCTCGAGTGTGGCGGGTTTCTC AAGGAACTCGGATATGAGGTGGACGTGGCCATGAGAAGTATTCCACTGCGTGGCTTTGAC CGACAGTGCAGTGAGAAGGTGGCGGACCTTATGGACAAGCTGGGTGTGACCTTCCACAAG CAGTACGTCCCGTCGCTGATCAAGAAGACCTCATCAGGTGACTTGGAGGTTACCATGACA CACACCGTCACCAATGAGGAGATCGTGAAGTCGTACAACACGGTTATGTTCGCCACCGGC CGCCGAGCGGACACTGATGGTCTTAACCTGGCTGCTGCCGGTTTGAGTGCTCTACCCAAT GGAAAGCTCGCTACAGACTACGCCGATGTGACGTCCGTATCGCACATCTACGCCATAGGT GACTGTGCACAAGAAAGGCCTGAACTGACTCCCGTAGCCGTTCAAGCCGGACAGTACCTT GCTCGCAGAGTGTTTGGTGGATCATCCAAGAATATGGACTACAAGATGGTAGCCACGGCC GTGTTCACGCCCTTTGAGTACGGGGCGGTGGGATACAGTGAGGAGGATGCCTTGACCACC TTTGGCGAAGATGCGATTGAAGTATATCTATTCGAATTCACAACGCTGGAGGCGGGCGCC GTACATCGCAAGAAGCACCCCTCCCGCATTGCGGACGAGTACGATGCCGACTTTGGCGAT ACATGCCTGGCTAAGCTGGTGTGTCTCAAGAATGAGAACGAACGGGTTGTTGGCTTCCAT TTCATTGGCCCTAACGCCGGAGAGATCACTCAAGGTTATGCTCTGGCCCTCAAAGCGGGT GTGACGAAAGCCATGTTCGATGACACTGTAGGTATCCATCCGACTGACGCTGAGTCGTTC CATGCGCTGGAGATCACGAGACGCAGTGGCAAGTCCTGGGTTGCTGAAGGCGGCTGTGGA GGT // supercont1.675:subseq(5523,20149) GeneWise match 1975 10149 355.86 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 1975 2245 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 2246 4111 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4112 4231 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 4232 4972 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 4973 5093 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5094 5451 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 5452 5696 0.00 + 1 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 5697 6584 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 6585 6701 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 6702 7084 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 7085 7266 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 7267 8334 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 8335 8503 0.00 + 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 8504 9183 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 9184 9312 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise intron 9313 10000 0.00 + . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 10001 10149 0.00 + 2 supercont1.675:subseq(5523,20149)-genewise-prediction-1 // genewise output Score 21.24 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|323451867|gb 108 QDHIKSLNFKYRVA Q +KSLNF+YR++ QGRFKSLNFQYRIS supercont1.675-13311 cgctaacatctaat aggtagtataagtc agacacgtcataaa // >supercont1.675:subseq(5523,20149).pep QGRFKSLNFQYRIS // >supercont1.675:subseq(5523,20149).[13311:13268].sp CAAGGGCGATTCAAAAGCCTGAATTTCCAATATAGAATATCA // supercont1.675:subseq(5523,20149) GeneWise match 13311 13270 21.24 - . supercont1.675:subseq(5523,20149)-genewise-prediction-1 supercont1.675:subseq(5523,20149) GeneWise cds 13311 13270 0.00 - 0 supercont1.675:subseq(5523,20149)-genewise-prediction-1 //