genewise output
Score 363.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|323451867|gb   15 DVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNV 
                     D+VV+GGGSGGLA +KE A+LGAKV   D+V+PSP GS WGLGGTCVNV 
                     DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNV 
gi|338242564|gb 9967 gtggagggaggtgggagggacggaggttgtggctccgtatgcggatgag 
                     attttggggggtcccaaccgtgcattgtaatacccagcaggtggcgtat 
                     tgggtccgtccggagggggggtcgcgttctgggaggtcggtgcggtgct 


gi|323451867|gb   64 GCIPKKLMHTASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIK 
                     GCIPK +MH ++ +G+ +   AA +GW         W+ +  TVQ +IK 
                     GCIPKIIMHNSAKLGQLMDHSAAPLGWSGTDGLTFVWQDLVKTVQLYIK 
gi|338242564|gb10114 gtacaaaacatgatgctagctggccgtagaggcatgtcgcgaagcctaa 
                     ggtcatttaaccatgattaacccctggggcagtcttgaattactatata 
                     tctggccgccgcggaaggctagcatcgtttctgaccggcgaggtatccg 


gi|323451867|gb  113 SLNFKYRVALREAGITYLN----------RLGEFEDKNTISLTDKKGNK 
                      LNF YR  LR AG+ Y+N          R         +     KG + 
                     QLNFSYRRGLRSAGVEYINAKATLLAAPERAQSGAKSGRVVEYTLKGER 
gi|338242564|gb10261 ccatttccgccaggggtaagagaccggcgagctggatgcgggtacaggc 
                     atatcagggtggcgtaatacaccttcccagcacgcacggttaactagag 
                     atccacatctccctagttctatacccccgacggccgttagggtacgcgg 


gi|323451867|gb  152 TSVTAARFIVAVGGRPN-KLGCPGG-EHAIDSDDLFSLPKAPGRVLCVG 
                       V A   +VAVGGRP      PG  E A+ SDDLFSL + P + L VG 
                     KEVRAKCVLVAVGGRPYIPRDVPGAVELAVTSDDLFSLSREPKKTLVVG 
gi|338242564|gb10408 aggcgatgtgggggcctaccggcggggtggaaggttattcgcaaatggg 
                     aatgcagtttctgggcatcgatcgctatctcgaattgtcgacaactttg 
                     ggggggttgacgtaggctagctctgtggcggttcgttagcggggtgggt 


gi|323451867|gb  199 GGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHG-- 
                       YIALEC GF   + Y  T  VRSI+LRGFDR+C   I+  +K  G   
                     ASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRQCAEHIQLVMKEQGTK 
gi|338242564|gb10555 gttagcgtggtcaccctggagtgctagccgtgcctggcactgaagcgaa 
                     ccatctagcgttcatgaatctgtgctttggtagagcaatatttaaagca 
                     ggctaagcggcgacgtttacgtaccagtctccagtgaccgggggaaccg 


gi|323451867|gb  246 -------VQLQ------VGVTPAKIEKDAATGVLTVTDSG--------- 
                            V LQ      V  +    ++ A T   T  D G          
                     FLEHEQVVSLQRVGEPDVAASDLAGDRGADTTSNTTADGGDKILVRFAS 
gi|338242564|gb10702 tcgcgcggtcccgggcggggagcgggcgggaataaagggggaacgctgt 
                     ttaaaattctagtgacatccgatcgaggcacccacccaggaatttgtcc 
                     cgacaaaggaacgcggtgctccacactggtggctgccctccgcccgcac 


gi|323451867|gb  273 GGVHEYDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQLP 
                     G    +DTV+ A GR A T +LG +    A   ++  + K+   + +   
                     GREEMFDTVVYAVGRRACTQSLGCE---AAGIAMHPASGKIVVDELEQT 
gi|338242564|gb10849 gcggatgaggtgggccgtacacgtg   gggagaccgtgaaggggcgca 
                     ggaattacttactgggcgcagtgga   ccgtctacccgatttaataac 
                     acaagccagccccgccaccatcccg   cccccgccatcgtgccgagat 


gi|323451867|gb  322 GAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATT 
                      AP VYAIGDV  GRPELTPVAI+AG  LARRLFGG  EPM Y  + T  
                     SAPGVYAIGDVCHGRPELTPVAIKAGELLARRLFGGANEPMVYTNIPTV 
gi|338242564|gb10987 tgcggtgagggtcgccgcacggaagggtcgacctgggagcagtaaacag 
                     cccgtactgatgaggcatcctctacgattcggttggcaacttacatcct 
                     cactccctacctcccgaatctccgccagccgcctacccacgtcatacgt 


gi|323451867|gb  371 IFTPLEYGTIGLSEDDAKAQLGECNVESYISEF--APL-----EYALSE 
                     +FTP+EYG  GLSE+DA  + G+ N+E ++  F   P+       ALS  
                     VFTPIEYGCCGLSEEDAITRYGQDNIEVFLFGFNSVPVSACHWKKALST 
gi|338242564|gb11134 gtacagtgttgctggggaaatgcgaaggtctgtatgcgtgtctaagcta 
                     ttcctaaggggtcaaactcgagaaatattttgtactctccgagaactcc 
                     cccaaatcccattaatccgactactcggcccccctgctcttcgagacac 


gi|323451867|gb  413 TRSERGDGC----FAKLVVDKSTGKVVGFHYLGPN               
                      + E          +K++  K   K+VG+H +  N               
                     RKDEFDLDVTPLNLSKIICKKPDNKIVGYHCIAMN               
gi|338242564|gb11281 caggtgcggaccacaaaataacgaaaggtctagaa               
                     gaaatatatcctatgattgaacaaattgaagtcta               
                     cacatcgtcccttccacccgatccactctccccgc               


gi|323451867|gb  444                        AGEITQGFSIAMRKGATYADFISTVG 
                                            AGE TQG+++A++ G T  D+ + VG 
                                            AGETTQGYALALKCGLTKDDLDAVVG 
gi|338242564|gb11386 GTAAGCG  Intron 1   TAGgggaacgtgtgcatgtaaggtggggg 
                     <0-----[11386:11508]-0>cgaccagactctaggtcaaatacttg 
                                            tagaggtcgggggtggcgctgcacgt 


gi|323451867|gb  470 IHPTVAEEFTSMTVTKSSGES-AAKGGCXG                    
                     IHPT AE F SMT+T+ SGES  A GGC G                    
                     IHPTDAESFHSMTITRRSGESFMAAGGCGG                    
gi|338242564|gb11587 accagggttctaaaaccaggataggggtgg                    
                     taccacactactctcggggagttccggggg                    
                     ccgtcaggccaggcttcccatcgtttcctt                    


//
>gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).pep
DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNVGCIPKIIMHNS
AKLGQLMDHSAAPLGWSGTDGLTFVWQDLVKTVQLYIKQLNFSYRRGLRSAGVEYINAKA
TLLAAPERAQSGAKSGRVVEYTLKGERKEVRAKCVLVAVGGRPYIPRDVPGAVELAVTSD
DLFSLSREPKKTLVVGASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRQCAEHIQLVMK
EQGTKFLEHEQVVSLQRVGEPDVAASDLAGDRGADTTSNTTADGGDKILVRFASGREEMF
DTVVYAVGRRACTQSLGCEAAGIAMHPASGKIVVDELEQTSAPGVYAIGDVCHGRPELTP
VAIKAGELLARRLFGGANEPMVYTNIPTVVFTPIEYGCCGLSEEDAITRYGQDNIEVFLF
GFNSVPVSACHWKKALSTRKDEFDLDVTPLNLSKIICKKPDNKIVGYHCIAMNAGETTQG
YALALKCGLTKDDLDAVVGIHPTDAESFHSMTITRRSGESFMAAGGCGG
//
>gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).[9967:11676].sp
GATTTGGTGGTGATTGGCGGCGGGAGTGGCGGCTTGGCGGCAGCGAAGGAGGCGGCGAGG
CTGGGTGCCAAGGTCGTGTGTTTTGACTATGTGGAGCCGTCACCGCAGGGTTCCAAGTGG
GGTCTGGGCGGGACGTGTGTGAACGTTGGTTGCATTCCGAAGATCATCATGCACAACTCG
GCCAAGTTGGGACAATTGATGGACCATTCAGCGGCCCCACTTGGCTGGAGTGGTACTGAC
GGTCTGACATTCGTCTGGCAGGACCTGGTAAAGACGGTTCAACTTTACATCAAGCAACTT
AACTTCTCATACCGACGTGGCCTTCGCAGCGCCGGTGTAGAGTATATTAACGCTAAAGCT
ACACTCCTCGCCGCCCCCGAGAGAGCCCAGTCGGGCGCCAAGTCTGGTCGAGTGGTGGAG
TATACACTCAAGGGCGAGCGGAAGGAGGTGCGGGCGAAGTGTGTTTTGGTAGCCGTGGGT
GGACGGCCGTACATTCCACGGGACGTTCCCGGTGCGGTTGAGTTGGCCGTGACGAGTGAT
GACTTGTTTAGTTTATCGCGCGAGCCGAAGAAGACTTTGGTGGTGGGTGCGTCGTACATT
GCACTAGAGTGCGCGGGGTTCCTGACACACCTGCGTTATGATGTAACCGTGTGTGTACGC
TCCATAGTGCTTCGCGGTTTCGACCGACAGTGTGCGGAACACATCCAGTTGGTGATGAAG
GAACAAGGCACCAAGTTCCTGGAACACGAACAAGTAGTGTCGCTACAACGCGTGGGCGAG
CCGGATGTGGCCGCTAGCGACCTAGCCGGAGACCGTGGGGCGGATACGACGTCCAATACG
ACCGCCGACGGTGGCGACAAGATCCTCGTCCGGTTCGCATCCGGACGCGAAGAAATGTTC
GACACAGTGGTCTACGCCGTCGGGCGCCGCGCATGCACCCAAAGTCTCGGCTGCGAGGCC
GCCGGCATCGCCATGCACCCCGCATCTGGCAAGATTGTGGTCGACGAGCTAGAGCAAACT
TCCGCACCCGGTGTCTACGCCATTGGAGACGTCTGTCACGGCCGCCCGGAACTAACTCCC
GTTGCCATCAAGGCCGGCGAATTGCTCGCCAGGCGCCTCTTTGGAGGCGCCAACGAACCC
ATGGTTTACACAAATATACCCACGGTTGTCTTCACCCCAATAGAATATGGCTGCTGCGGA
CTTTCTGAAGAAGATGCCATCACGAGATACGGTCAAGACAATATCGAGGTGTTCCTCTTC
GGCTTCAACTCTGTGCCCGTTTCCGCTTGTCACTGGAAAAAGGCACTCTCAACCCGCAAA
GACGAATTTGACCTGGATGTCACCCCCCTTAATCTCAGCAAAATCATCTGCAAGAAACCT
GACAACAAAATCGTTGGCTATCACTGCATCGCCATGAACGCTGGAGAGACAACGCAGGGT
TACGCGTTGGCGCTGAAGTGTGGGTTGACCAAGGACGATTTGGACGCAGTCGTGGGTATC
CACCCGACTGACGCAGAGTCGTTCCACTCAATGACGATCACTCGTCGCAGCGGCGAAAGT
TTCATGGCTGCTGGTGGCTGCGGTGGT
//
gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)	GeneWise	match	9967	11676	403.26	+	.	gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1
gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)	GeneWise	cds	9967	11385	0.00	+	0	gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1
gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)	GeneWise	intron	11386	11508	0.00	+	.	gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1
gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)	GeneWise	cds	11509	11676	0.00	+	0	gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1
//

genewise output
Score 18.10 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|323451867|gb  336 RPELTPVAIEAGLRLARRL                               
                     RP L P+A+E  L  + RL                               
                     RPHLLPLALECILHHSTRL                               
gi|338242564|g-10422 cccccccgcgtaccctaac                               
                     gcattctctagttaaccgt                               
                     cgcctgcctgtacccgcat                               


//
>gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).pep
RPHLLPLALECILHHSTRL
//
>gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000).[10422:10364].sp
CGCCCGCACCTCCTTCCGCTCGCCCTTGAGTGTATACTCCACCACTCGACCAGACTT
//
gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)	GeneWise	match	10422	10366	18.10	-	.	gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1
gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)	GeneWise	cds	10422	10366	0.00	-	0	gi|338242564|gb|AFNH01001883.1|:subseq(2496,17000)-genewise-prediction-1
//