TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|288565202|gb|GG743995.1|:subseq(66495,30000) Saprolegnia
parasitica CBS 223.65 genomic scaffold supercont1.113, whole genome
shotgun sequence:[translate(1)]
         (474 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                   220   1e-57
T.congo.pschr.11                                                      133   2e-31

>TcIL3000_10_v2.embl
          Length = 3612457

 Score =  220 bits (560), Expect = 1e-57
 Identities = 162/470 (34%), Positives = 234/470 (49%), Gaps = 21/470 (4%)
 Frame = -1

Query: 4       WDLVVIGGGSGGLAASKEAAK-YGQKVLVLDYVKPSPQGSTWGLGGTCVNVGCIPKKLMH 62
               +DLV+IG GSGGL A   AA  Y ++V V+D            LGGTCVNVGC+PKKLM 
Sbjct: 2273023 FDLVIIGAGSGGLEAGWNAATLYKKRVAVVDVQTVHGPPFFAALGGTCVNVGCVPKKLMV 2272844

Query: 63      QSAIMGELLHKDAEAFGWAVPNATF--DWTKLVTSVQDYIHGLNFKYRVDLRDKKVKYEN 120
                 A   + L + A  FGW    +T   +W  L+ +    +  +N  Y    +D +   E 
Sbjct: 2272843 TGAQYMDQLRESA-GFGWEFDASTIKANWKTLIAAKNAAVLDINKSYEDMFKDTE-GLEF 2272670

Query: 121     FLG--TFKDAHTLTLTNPA--KGKPPKDVTFRRALIAVGGRPKSLDCPGADLAISSDDIF 176
               FLG    +  + +T+   A  K K  + +     +IA G  P+ L  PG +  ISS++ F
Sbjct: 2272669 FLGWGALEQKNVVTVREGADPKSKVKERLQAEHIIIATGSWPQMLKIPGIEHCISSNEAF 2272490

Query: 177     SRPTPPGKTLVVGASYVALECAGFLKAQ---GFDVTVMVRSI-LLRGFDTDMAARIGTYM 232
                   PP + L VG  ++++E AG   A    G  VT+  R+  +LRGFD  +   +   +
Sbjct: 2272489 YLEEPPRRVLTVGGGFISVEFAGIFNAYKPVGGKVTLCYRNNPILRGFDYTLREELTKQL 2272310

Query: 233     EEEAKIDFIKGAVPTSIEQLANGEGIY----------DTVLNATGRNPDVSGLNLPAAGV 282
                    ID +    P+ IE   +G              D V+ A GR P    L L   GV
Sbjct: 2272309 VANG-IDIMTNENPSKIELNPDGSKHVTFESGKTLDVDVVMMAIGRLPRTGDLQLQTVGV 2272133

Query: 283     GLNPKTGRIAVTHEQTSAPHIYAVGDVIDGPELTPVAIQAGRLLAKRLFDNSATLMAYDK 342
                L  K         +T+ P+IYA+GDV     LTPVAI  G  +   +F +      + +
Sbjct: 2272132 NLTDKGAIQVDEFSRTNVPNIYAIGDVTGRIMLTPVAINEGASVVDTIFGSKPRKTDHTR 2271953

Query: 343     VCTAVFTPIEYGCCGLSEDAAIETIGADNLGVYHQSFTPLEWSLSHDRALAKECYCKLIV 402
               V +AVF+    G CGL+E+ A ++   + + VY   FTPL  ++S  +   K+   K+I 
Sbjct: 2271952 VASAVFSIPPIGTCGLTEEEAAKSF--EKVAVYLSCFTPLMHNISGSK--YKKFVAKIIT 2271785

Query: 403     DRTQNDRVVGFHYLGPNAGEVTQAVGIAMKLNASYDDFVSTVGIHPTTAE 452
               D   +  VVG H LG ++ E+ QAVGI MKLNA   DF +T+G+HPT+AE
Sbjct: 2271784 DH-GDGTVVGVHLLGDSSPEIIQAVGICMKLNAKISDFYNTIGVHPTSAE 2271638


>T.congo.pschr.11
          Length = 4797796

 Score =  133 bits (334), Expect = 2e-31
 Identities = 126/469 (26%), Positives = 202/469 (43%), Gaps = 20/469 (4%)
 Frame = -2

Query: 4       WDLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTCVNVGCIPKKLMHQ 63
               +D+VV+GGG GG  A+ +AA+ G K   ++            LGGTC+NVGCIP K +  
Sbjct: 4689198 YDVVVVGGGPGGYVAAIKAAQLGLKTACVE--------KRGALGGTCLNVGCIPSKALLH 4689043

Query: 64      SAIMGELLHKDAEAFGWAV-PNATFDWTKLVTSVQDYIHGLNFKYRVDLRDKKVKYENFL 122
               +  +    H + E +G     N T D +K+    +  + GL       L+  KV Y    
Sbjct: 4689042 ATHLYHDAHANFERYGLVGGKNVTMDVSKMQQQKESAVKGLTGGVEYLLKKNKVTYYKGE 4688863

Query: 123     GTFKDAHTLTLTNPAKGKPPKD--VTFRRALIAVGGRPKSLDCPGAD--LAISSDDIFSR 178
                 F   +TL +    KG   KD  +  +  +IA G  P +L     D  + +SS    + 
Sbjct: 4688862 AGFLTPNTLNV----KGLDGKDEKLEVKNTIIATGSEPTALPFLPFDEKVVLSSTGALAL 4688695

Query: 179     PTPPGKTLVVGASYVALECAGFLKAQGFDVTVM-VRSILLRGFDTDMAARIGTYMEEEAK 237
                  P K +V+G   + LE        G +VTV+          D D+   +   +++  K
Sbjct: 4688694 QRVPKKMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDADVTDVLVGALKKNEK 4688515

Query: 238     IDFI----------KG-AVPTSIEQLANGEGIY--DTVLNATGRNPDVSGLNLPAAGVGL 284
               + F+          KG +V   +EQ          D +L + GR P  +GL L    V  
Sbjct: 4688514 MKFMTNTKVVAGVNKGDSVDLEVEQAGGKRETLHCDALLVSVGRRPYTAGLGLDKINVAT 4688335

Query: 285     NPKTGRIAVTHEQTSAPHIYAVGDVID-GPELTPVAIQAGRLLAKRLFDNSATLMAYDKV 343
               N +      +H +T+   +YA+GDV+D GP L   A   G   A+ L       + YD +
Sbjct: 4688334 NERGFVKIGSHFETNVAGVYAIGDVVDKGPMLAHKAEDEGVACAEILAGRPGH-VNYDVI 4688158

Query: 344     CTAVFTPIEYGCCGLSEDAAIETIGADNLGVYHQSFTPLEWSLSHDRALAKECYCKLIVD 403
                  ++T  E    G +ED   +   A  +G +     P   +        ++ + K++ D
Sbjct: 4688157 PGVIYTMPEVASVGKTEDELKKAGVAYKVGKF-----PFNANSRAKAVAIEDGFVKVLTD 4687993

Query: 404     RTQNDRVVGFHYLGPNAGEVTQAVGIAMKLNASYDDFVSTVGIHPTTAE 452
               +   DR++G H +   AGE+     +AM+  AS +D   T   HPT +E
Sbjct: 4687992 KA-TDRILGVHIVCSAAGELIAEACLAMEYGASSEDVGRTCHAHPTMSE 4687849


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.318    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,618,953
Number of Sequences: 11
Number of extensions: 196330
Number of successful extensions: 822
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 397
length of query: 474
length of database: 7,429,315
effective HSP length: 101
effective length of query: 373
effective length of database: 7,428,204
effective search space: 2770720092
effective search space used: 2770720092
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)