TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|288565202|gb|GG743995.1|:subseq(66495,30000) Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.113, whole genome shotgun sequence:[translate(1)] (474 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.675 of Sphaeroforma arctica JP610 120 6e-27 supercont1.1152 of Sphaeroforma arctica JP610 74 1e-12 supercont1.149 of Sphaeroforma arctica JP610 59 2e-08 supercont1.2418 of Sphaeroforma arctica JP610 54 7e-07 supercont1.506 of Sphaeroforma arctica JP610 52 3e-06 >supercont1.675 of Sphaeroforma arctica JP610 Length = 50823 Score = 120 bits (302), Expect = 6e-27 Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 5/111 (4%) Frame = +1 Query: 2 YDWDLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTCVNVGCIPKKLM 61 YD D +VIGGGSGG+AA+KEAAK G KV + DYVKPS QG+ WGLGGTCVNVGC+PKK+M Sbjct: 7498 YDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKKIM 7677 Query: 62 HQSAIMGELLHKDAEAFGWAV--PNATFDWTK---LVTSVQDYIHGLNFKY 107 H + + +H DA+A GW V + DWT + S+ Y++ KY Sbjct: 7678 HYAGLQAINMH-DAQALGWQVEADSIKHDWTSMFFICISISMYLYMYMCKY 7827 Score = 80.9 bits (198), Expect = 7e-15 Identities = 41/90 (45%), Positives = 62/90 (68%) Frame = +2 Query: 171 SSDDIFSRPTPPGKTLVVGASYVALECAGFLKAQGFDVTVMVRSILLRGFDTDMAARIGT 230 +SDDIFS T PG+TL VGASY++LEC GFLK G++V V +RSI LRGFD + ++ Sbjct: 10970 TSDDIFSLYTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVAD 11149 Query: 231 YMEEEAKIDFIKGAVPTSIEQLANGEGIYD 260 M ++ + F K VP+ I++ ++G+ + + Sbjct: 11150 LM-DKLGVTFHKQYVPSLIKKTSSGKVVVE 11236 Score = 57.4 bits (137), Expect = 8e-08 Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 4/88 (4%) Frame = +1 Query: 279 AAGVGLNPKTGRIAVTH-EQTSAPHIYAVGDVI-DGPELTPVAIQAGRLLAKRLFDNSAT 336 AAG+ P G++A + + TS HIYA+GD + PELTPVA+QAG+ LA+R+F S+ Sbjct: 12607 AAGLSALPN-GKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSK 12783 Query: 337 LMAY--DKVCTAVFTPIEYGCCGLSEDA 362 M +K C + +P +G G++ +A Sbjct: 12784 NMVRFPNKTCAVILSP--FGGGGMAPEA 12861 Score = 53.1 bits (126), Expect = 2e-06 Identities = 27/59 (45%), Positives = 31/59 (52%) Frame = +1 Query: 340 YDKVCTAVFTPIEYGCCGLSEDAAIETIGADNLGVYHQSFTPLEWSLSHDRALAKECYC 398 Y V TAVFTP EYG G SE+ A+ T G D + VY FT LE H + YC Sbjct: 13861 YKMVATAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLEAGAVHRKKHPSRMYC 14037 Score = 49.7 bits (117), Expect = 2e-05 Identities = 19/44 (43%), Positives = 29/44 (65%) Frame = +3 Query: 388 HDRALAKECYCKLIVDRTQNDRVVGFHYLGPNAGEVTQAVGIAM 431 +D C KL+ + +N+RVVGFH++GPNAGE+TQ + + Sbjct: 14721 YDADFGDTCLAKLVCLKNENERVVGFHFIGPNAGEITQGTTLCL 14852 >supercont1.1152 of Sphaeroforma arctica JP610 Length = 21143 Score = 73.6 bits (179), Expect = 1e-12 Identities = 46/106 (43%), Positives = 62/106 (58%) Frame = +3 Query: 4 WDLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTCVNVGCIPKKLMHQ 63 +DL+VIGGGSGG+A ++ A+YG KV V G +GGTCVNVGC+PKK+M Sbjct: 11025 YDLLVIGGGSGGIATARRCAEYGAKVGVA-------VGGV--IGGTCVNVGCVPKKVMFM 11177 Query: 64 SAIMGELLHKDAEAFGWAVPNATFDWTKLVTSVQDYIHGLNFKYRV 109 +A E +H D +G+ V FDW +V +IH FKY + Sbjct: 11178 AASHMEGIH-DLPGYGFDVDFKKFDWGCVV----KFIH---FKYSI 11291 Score = 52.0 bits (123), Expect = 3e-06 Identities = 23/50 (46%), Positives = 34/50 (68%) Frame = +3 Query: 408 DRVVGFHYLGPNAGEVTQAVGIAMKLNASYDDFVSTVGIHPTTAEIFTTL 457 ++VVG H +G A E+TQ G+A+K+ A+ DF ++V IHPT AE T+ Sbjct: 16719 EKVVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868 >supercont1.149 of Sphaeroforma arctica JP610 Length = 132930 Score = 59.3 bits (142), Expect = 2e-08 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = +3 Query: 252 LANGEG-IYDTVLNATGRNPDVSGLNLPAAGVGLNPKTGRIAVTHEQTSAPHIYAVGDVI 310 + NG+ ++D +L A GR P+V LNL AGV + KTG + + QT+ +IYA GD+ Sbjct: 90333 MKNGDKFVFDELLVAAGRVPNVENLNLDVAGVDFDKKTGVVVNDYLQTTNSNIYAAGDIC 90512 Query: 311 DGPELTPVAIQAGRLLAKRLFDNSATLMAYDKVCTAVFTPIEYGCCGLSEDAAIETIGAD 370 + T VA R++ + + + + A++T E GL E AI G Sbjct: 90513 FKYKFTHVADFLARIVVRNALFFGKSKASDLLIPWAIYTEPEVAHVGLYEKDAIAKHG-- 90686 Query: 371 NLGVYHQSFTPLE 383 ++ VY QS + E Sbjct: 90687 SVDVYKQSMSSFE 90725 >supercont1.2418 of Sphaeroforma arctica JP610 Length = 6725 Score = 54.3 bits (129), Expect = 7e-07 Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 24/190 (12%) Frame = -1 Query: 146 TFRRALIAVGGRPKSLDCPGADL-------AISSDDI---FSRPTPPGKTL-VVGASYVA 194 T+ R +++ G +P PG DL A+ ++ + + TP KT +VG ++ Sbjct: 3752 TYDRLILSPGAQPIIPPFPGRDLPGIFTIRAVPDTELVRSWLKNTPDAKTATIVGGGFIG 3573 Query: 195 LECAGFLKAQGFDVTVM-VRSILLRGFDTDMAARIGTYMEEEAKIDFIKGAVPTSIE--- 250 LE A L GF VT++ + ++ D +MA +E A ID + G E Sbjct: 3572 LEMAENLHTLGFKVTIIDMADQVMTPMDKEMAIYAEQVLER-ADIDLVLGDGVAGFEPAD 3396 Query: 251 ------QLANGEGI-YDTVLNATGRNPDVSGLNLPAAGVGLN-PKTGRIAVT-HEQTSAP 301 + A+G + D V+ A G PD N A GL K+G IAV H+ TS Sbjct: 3395 GKTLLVRTAHGRAVDADIVILAIGVRPD----NKLAVDAGLAVAKSGCIAVDDHQTTSDA 3228 Query: 302 HIYAVGDVID 311 ++YAVGDV + Sbjct: 3227 NVYAVGDVAE 3198 >supercont1.506 of Sphaeroforma arctica JP610 Length = 66308 Score = 52.4 bits (124), Expect = 3e-06 Identities = 27/63 (42%), Positives = 38/63 (60%) Frame = +1 Query: 3 DWDLVVIGGGSGGLAASKEAAKYGQKVLVLDYVKPSPQGSTWGLGGTCVNVGCIPKKLMH 62 ++DLVVIGGG GG + +AA+ G KV ++ LGGTC+NVGC+P K + Sbjct: 54958 EYDLVVIGGGPGGYIGAIKAAQMGMKVACVE--------GRGRLGGTCLNVGCMPSKALL 55113 Query: 63 QSA 65 S+ Sbjct: 55114 NSS 55122 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.318 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,950,957 Number of Sequences: 15618 Number of extensions: 1039069 Number of successful extensions: 3779 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 755 Number of HSP's successfully gapped in prelim test: 166 Number of HSP's that attempted gapping in prelim test: 2685 Number of HSP's gapped (non-prelim): 1724 length of query: 474 length of database: 40,529,447 effective HSP length: 113 effective length of query: 361 effective length of database: 38,764,613 effective search space: 13994025293 effective search space used: 13994025293 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)