TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus musculus # Complete (615 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 202 3e-52 T.congo.pschr.11 127 2e-29 T.congo.pschr4 70 4e-12 T.congo.pschr.8 69 6e-12 >TcIL3000_10_v2.embl Length = 3612457 Score = 202 bits (515), Expect = 3e-52 Identities = 148/452 (32%), Positives = 230/452 (50%), Gaps = 10/452 (2%) Frame = -1 Query: 152 KKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGHALQDAKKYGWEYN-QQV 210 K+V V+D LGGTCVNVGC+PKKLM A L+++ +GWE++ + Sbjct: 2272951 KRVAVVDVQTVHGPPFFAALGGTCVNVGCVPKKLMVTGAQYMDQLRESAGFGWEFDASTI 2272772 Query: 211 KHNWEAMTEAIQSHIGSLNWGYRVTLRE-KGVTYVNSFGEFVDLHKIK----ATNKKGQE 265 K NW+ + A + + +N Y ++ +G+ + +G + + A K + Sbjct: 2272771 KANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFLGWGALEQKNVVTVREGADPKSKVK 2272592 Query: 266 TFYTASKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFL 325 A +IATG P+ L I G E+CI+S++ F L P L VG ++ +E AG Sbjct: 2272591 ERLQAEHIIIATGSWPQMLKIPG-IEHCISSNEAFYLEEPPRRVLTVGGGFISVEFAGIF 2272415 Query: 326 AG---LGLDVTVMVR-SVLLRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPG 381 +G VT+ R + +LRGFD + E++ L G+ P ++E G Sbjct: 2272414 NAYKPVGGKVTLCYRNNPILRGFDYTLREELTKQLVANGIDIMTNENP---SKIELNPDG 2272244 Query: 382 KLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTN 441 V + E +T++ + V++AIGR T + L+ +GV + +K G I V++ +TN Sbjct: 2272243 SKHV---TFESGKTLD--VDVVMMAIGRLPRTGDLQLQTVGVNLTDK-GAIQVDEFSRTN 2272082 Query: 442 VPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGL 501 VP++YAIGD+ G+ LTPVAI G + +FG K D+ + + VF+ G CGL Sbjct: 2272081 VPNIYAIGDV-TGRIMLTPVAINEGASVVDTIFGSKPRKTDHTRVASAVFSIPPIGTCGL 2271905 Query: 502 SEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNA 561 +EE+A + ++K + VY + F PL ++G AKII + D VVG HLLG ++ Sbjct: 2271904 TEEEAAKSFEK--VAVYLSCFTPLMHNISGSKYKKFVAKIITDHGDG-TVVGVHLLGDSS 2271734 Query: 562 GEITQGFAAAMKCGLTKQLLDDTIGIHPTCGE 593 EI Q MK +TIG+HPT E Sbjct: 2271733 PEIIQAVGICMKLNAKISDFYNTIGVHPTSAE 2271638 >T.congo.pschr.11 Length = 4797796 Score = 127 bits (319), Expect = 2e-29 Identities = 134/487 (27%), Positives = 205/487 (42%), Gaps = 22/487 (4%) Frame = -2 Query: 129 YDXXXXXXXXXXXXCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKK-LMH 187 YD A +AA LG K ++ LGGTC+NVGCIP K L+H Sbjct: 4689198 YDVVVVGGGPGGYVAAIKAAQLGLKTACVE--------KRGALGGTCLNVGCIPSKALLH 4689043 Query: 188 QAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSF 247 L A + ++YG + V + M + +S + L G L++ VTY Sbjct: 4689042 ATHLYHDAHANFERYGLVGGKNVTMDVSKMQQQKESAVKGLTGGVEYLLKKNKVTYYKGE 4688863 Query: 248 GEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLG-IQGDKEYCITSDDLFSLPYCP 306 F+ + + G++ +IATG P L + D++ ++S +L P Sbjct: 4688862 AGFLTPNTLNVKGLDGKDEKLEVKNTIIATGSEPTALPFLPFDEKVVLSSTGALALQRVP 4688683 Query: 307 GCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRK 366 +V+G +GLE A LG +VTV+ E A + L+ Sbjct: 4688682 KKMVVIGGGVIGLELGSVWARLGAEVTVV-----------EFAPRCAPTLDAD------- 4688557 Query: 367 FTPILVQQLEKGLPGKL----KVVAKSTEGP------ETVEGIYNT-----VLLAIGRDS 411 T +LV L+K K KVVA +G E G T +L+++GR Sbjct: 4688556 VTDVLVGALKKNEKMKFMTNTKVVAGVNKGDSVDLEVEQAGGKRETLHCDALLVSVGRRP 4688377 Query: 412 CTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLAR 471 T +GL+KI V NE+ G + + +TNV VYAIGD++D P L A G A Sbjct: 4688376 YTAGLGLDKINVATNER-GFVKIGSHFETNVAGVYAIGDVVDKGPMLAHKAEDEGVACAE 4688200 Query: 472 RLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLE----- 526 L G +Y IP ++T E G +E++ KK + Y +P Sbjct: 4688199 ILAG-RPGHVNYDVIPGVIYTMPEVASVGKTEDE----LKKAGV-AYKVGKFPFNANSRA 4688038 Query: 527 WTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIG 586 VA D + K++ +K +R++G H++ AGE+ AM+ G + + + T Sbjct: 4688037 KAVAIEDG---FVKVLTDK-ATDRILGVHIVCSAAGELIAEACLAMEYGASSEDVGRTCH 4687870 Query: 587 IHPTCGE 593 HPT E Sbjct: 4687869 AHPTMSE 4687849 >T.congo.pschr4 Length = 1343510 Score = 69.7 bits (169), Expect = 4e-12 Identities = 90/359 (25%), Positives = 153/359 (42%), Gaps = 21/359 (5%) Frame = -3 Query: 236 LREKGVTYVNSFGEFVDLHKIKATNKKGQETFY-TASKFVIATGERPR-YLGIQGDKEYC 293 LR GVT V F H++ + E TA F+IATG PR + + D Sbjct: 1340715 LRAAGVTTVFGKAMFSSPHELDVHSPSTNEYHVLTADYFIIATGSVPRQHEFVTVDHRRV 1340536 Query: 294 ITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLG-LDVTVMVRS-VLLRGFDQEMAEK 351 +T+D + LP P +++GA VG E A A G +VT++ ++ +L D+++A Sbjct: 1340535 VTTDTIMQLP-IPSSLVIIGAGAVGCEFASIYANFGRTEVTIIDKARRILPKEDEDIANF 1340359 Query: 352 VGSYLEQQGVKFQRKFTPILVQQLEKG--LPGKLKVVAKSTEGPETVEGIYNT-----VL 404 V +L ++GV+ T ++ E+ + G + V + E + T L Sbjct: 1340358 VEEHLAKRGVRIHHTCTLFDLESWEESEEIGGCVYSVRHDNKTDSHNEALVETYEAERAL 1340179 Query: 405 LAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVP--HVYAIGDILDGKPELTPVA 462 +++GR +GLE K+ G++ + DV VP H+YA+GD L + Sbjct: 1340178 VSLGRVPNLSGLGLENTACKVT--GGQVAL-DVFGRCVPYEHIYAVGD-ASADRGLVNLG 1340011 Query: 463 IQAGKLLARRLFGV----SLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEM---YKKENL 515 G+ ++ + N+ T +F E C GL+EE + Y Sbjct: 1340010 EAQGRGAVDHIYSERPQRPVNSSLLTNLSTILFLEEEMACVGLNEEHCRALGIGYIVARF 1339831 Query: 516 EVYHTLFWPLEWTVA-GRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMK 573 + H L VA G C K++ +R++G +G +AG I + + A++ Sbjct: 1339830 DYSH-----LSRAVAMGGAQGFC--KVVATNDREKRLLGVRAVGAHAGSIVEVASLAIR 1339675 Score = 63.9 bits (154), Expect = 2e-10 Identities = 82/382 (21%), Positives = 159/382 (41%), Gaps = 22/382 (5%) Frame = -3 Query: 236 LREKGVTYVNSFGEFVDLHKIKATNKKGQE-TFYTASKFVIATGERP-RYLGIQGDKEYC 293 L V + F H+++ +++ +E TA F+IATG P I D ++ Sbjct: 1342818 LHASNVALLYGRAAFASSHELEVCSREAKEYRTVTADYFIIATGSVPVTQPHIPVDHKHV 1342639 Query: 294 ITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMV--RSVLLRGFDQEMAEK 351 +TSDDL LP P +VVG +G E A A LG ++ + ++ D ++AE Sbjct: 1342638 VTSDDLMMLPL-PKSMVVVGGGALGSEFAATYARLGKTKVYLLDKKERIMPKEDDDVAET 1342462 Query: 352 VGSYLEQQGVKFQRK------FTPILVQQLEKGLPG----------KLKVVAKSTEGPET 395 + +E+ GV + +P+ Q + + G + ++ + T +T Sbjct: 1342461 IQRGMEKNGVVVHQDCLLYSMHSPL--QNNDWAMEGNNGGDHHPTVRYTIMHRKTHELQT 1342288 Query: 396 VEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQ-TNVPHVYAIGDILDG 454 E L+ GR +GL K + G + +N Q N H+YA+GD D Sbjct: 1342287 YE--VERALVVTGRRPNYFGLGLRN--TKCEVRGGSLVLNAFGQCVNQKHIYAVGDATDN 1342120 Query: 455 KPELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKEN 514 ++ + G+L ++ + + + + VF G +E++ +++N Sbjct: 1342119 DRSVS-MGEAKGRLAVDHIYSPHVTEPLHPDHSRIVFLDTAVAAVGKNEKQC----REQN 1341955 Query: 515 LE-VYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMK 573 + V + L N + KI+ + + ++G H++G +A I + AA++ Sbjct: 1341954 ISYVVAKYGFELCSRNVAASNTEGFVKILASNDSKKTLLGVHVVGWSASTIVEFATAAIQ 1341775 Query: 574 CGLTKQLLDDTIGIHPTCGEVF 595 + L + + +P+ + F Sbjct: 1341774 RKQSAYELSEMLTAYPSVSQAF 1341709 >T.congo.pschr.8 Length = 2451971 Score = 69.3 bits (168), Expect = 6e-12 Identities = 90/359 (25%), Positives = 153/359 (42%), Gaps = 21/359 (5%) Frame = +1 Query: 236 LREKGVTYVNSFGEFVDLHKIKATNKKGQETFY-TASKFVIATGERPR-YLGIQGDKEYC 293 LR GVT V F H++ + E TA F+IATG PR + + D Sbjct: 2090335 LRAAGVTTVFGKAMFSSPHELDVHSPSTNEYHVLTADYFIIATGSVPRQHEFVTVDHRRV 2090514 Query: 294 ITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLG-LDVTVMVRS-VLLRGFDQEMAEK 351 +T+D + LP P +++GA VG E A A G +VT++ ++ +L D+++A Sbjct: 2090515 VTTDTIMQLP-IPSSLVIIGAGAVGCEFASIYANFGRTEVTIIDKARRILPKEDEDIANF 2090691 Query: 352 VGSYLEQQGVKFQRKFTPILVQQLEKG--LPGKLKVVAKSTEGPETVEGIYNT-----VL 404 V +L ++GV+ T ++ E+ + G + V + E + T L Sbjct: 2090692 VEEHLAKRGVRIHHTCTLFDLESWEESEEIGGCVYSVRHDNKTDSHNEALVETYEAERAL 2090871 Query: 405 LAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVP--HVYAIGDILDGKPELTPVA 462 +++GR +GLE K+ G++ + DV VP H+YA+GD L + Sbjct: 2090872 VSLGRVPNLSGLGLENTACKVT--GGQVAL-DVFGRCVPYEHIYAVGD-ASADRGLVNLG 2091039 Query: 463 IQAGKLLARRLFGV----SLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEM---YKKENL 515 G+ ++ + N+ T +F E C GL+EE + Y Sbjct: 2091040 EAQGRGAVDHIYSERPQRPVNSSLLTNLSTILFLEEEMACVGLNEEHCRALGIGYIVARF 2091219 Query: 516 EVYHTLFWPLEWTVA-GRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMK 573 + H L VA G C K++ +R++G +G +AG I + + A++ Sbjct: 2091220 DYSH-----LSRAVAMGGAQGFC--KVVVTNDREKRLLGVRAVGAHAGSIVEVASLAIR 2091375 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,093,266 Number of Sequences: 11 Number of extensions: 236668 Number of successful extensions: 1019 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 861 Number of HSP's gapped (non-prelim): 485 length of query: 615 length of database: 7,429,315 effective HSP length: 104 effective length of query: 511 effective length of database: 7,428,171 effective search space: 3795795381 effective search space used: 3795795381 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 106 (45.4 bits)