TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus
musculus # Complete
         (615 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.675 of Sphaeroforma arctica JP610                           95   6e-19
supercont1.1152 of Sphaeroforma arctica JP610                          56   3e-07
supercont1.778 of Sphaeroforma arctica JP610                           55   4e-07
supercont1.160 of Sphaeroforma arctica JP610                           53   3e-06
supercont1.149 of Sphaeroforma arctica JP610                           52   6e-06
supercont1.506 of Sphaeroforma arctica JP610                           51   8e-06

>supercont1.675 of Sphaeroforma arctica JP610
          Length = 50823

 Score = 94.7 bits (234), Expect = 6e-19
 Identities = 45/94 (47%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +1

Query: 125  SAHDYDXXXXXXXXXXXXCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKK 184
            S +D D             AKEAA  G KV + D+V PS QGT WGLGGTCVNVGC+PKK
Sbjct: 7492 SQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKK 7671

Query: 185  LMHQAALLGHALQDAKKYGWEYN-QQVKHNWEAM 217
            +MH A L    + DA+  GW+     +KH+W +M
Sbjct: 7672 IMHYAGLQAINMHDAQALGWQVEADSIKHDWTSM 7773



 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 42/84 (50%), Positives = 59/84 (70%)
 Frame = +2

Query: 295   TSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGS 354
             TSDD+FSL   PG TL VGASY+ LEC GFL  LG +V V +RS+ LRGFD++ +EKV  
Sbjct: 10970 TSDDIFSLYTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVAD 11149

Query: 355   YLEQQGVKFQRKFTPILVQQLEKG 378
              +++ GV F +++ P L+++   G
Sbjct: 11150 LMDKLGVTFHKQYVPSLIKKTSSG 11221



 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 34/81 (41%), Positives = 49/81 (60%)
 Frame = +1

Query: 429   NGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLEKCDYINIPT 488
             NGK+  +  + T+V H+YAIGD    +PELTPVA+QAG+ LARR+FG S +        T
Sbjct: 12631 NGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKNMVRFPNKT 12810

Query: 489   TVFTPLEYGCCGLSEEKAIEM 509
                    +G  G++ E A++M
Sbjct: 12811 CAVILSPFGGGGMAPE-AVQM 12870



 Score = 57.8 bits (138), Expect = 9e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +3

Query: 535   NTCYAKIICNKFDNERVVGFHLLGPNAGEITQG 567
             +TC AK++C K +NERVVGFH +GPNAGEITQG
Sbjct: 14739 DTCLAKLVCLKNENERVVGFHFIGPNAGEITQG 14837



 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +1

Query: 567   GFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLD-ITQKGCUG 615
             G+A A+K G+TK + DDT+GIHPT  E F  LEIT+ SG   + + GC G
Sbjct: 15523 GYALALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG 15672



 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +1

Query: 216  AMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLH 254
            A+ E +Q+H+GSLNWGY++ LR   V Y+N+   F+D H
Sbjct: 9634 ALVETVQNHVGSLNWGYKLGLRSNKVNYINATAAFIDAH 9750


>supercont1.1152 of Sphaeroforma arctica JP610
          Length = 21143

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +3

Query: 549   ERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 598
             E+VVG H++G  A E+TQGF  A+K G TK+  D+++ IHPT  E   T+
Sbjct: 16719 EKVVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868


>supercont1.778 of Sphaeroforma arctica JP610
          Length = 43576

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = -2

Query: 35   IEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDD-GASVQEVLTEISNQKTVP 93
            I  + V++FSKS C  S    ++F++L     ++ELD++   G S+   +  ISN KTVP
Sbjct: 2874 ITDSPVVMFSKSDCEFSKEATKIFTTLQACVYVVELDRMGGYGESILNAVKRISNLKTVP 2695

Query: 94   NIFVNKVHVGGCDRTFQAHQNGLLQKLLQ 122
             I++N   +GGC +      +G L ++L+
Sbjct: 2694 VIYINGTPIGGCTQLKALEASGELVRILR 2608


>supercont1.160 of Sphaeroforma arctica JP610
          Length = 130988

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 24/49 (48%), Positives = 33/49 (67%)
 Frame = -3

Query: 74     DDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQ 122
              DDG ++Q  L EIS Q+TVPN+FV   H+GG D    A ++G  QK+L+
Sbjct: 102738 DDGGALQAALQEISGQRTVPNVFVKSTHIGGNDDLQAAVRSGSFQKMLK 102592


>supercont1.149 of Sphaeroforma arctica JP610
          Length = 132930

 Score = 51.6 bits (122), Expect = 6e-06
 Identities = 46/167 (27%), Positives = 79/167 (47%)
 Frame = +3

Query: 352   VGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDS 411
             V +  E++G+K         +++ E G   + ++V     G + V   ++ +L+A GR  
Sbjct: 90225 VTNQFEKEGIKLYLSSDYERIEKRE-GAEKETEIVLHMKNGDKFV---FDELLVAAGRVP 90392

Query: 412   CTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLAR 471
                 + L+  GV  ++K G + VND  QT   ++YA GDI   K + T VA    +++ R
Sbjct: 90393 NVENLNLDVAGVDFDKKTGVV-VNDYLQTTNSNIYAAGDIC-FKYKFTHVADFLARIVVR 90566

Query: 472   RLFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVY 518
                     K   + IP  ++T  E    GL E+ AI   K  +++VY
Sbjct: 90567 NALFFGKSKASDLLIPWAIYTEPEVAHVGLYEKDAIA--KHGSVDVY 90701


>supercont1.506 of Sphaeroforma arctica JP610
          Length = 66308

 Score = 51.2 bits (121), Expect = 8e-06
 Identities = 34/100 (34%), Positives = 53/100 (53%)
 Frame = +1

Query: 393   PETVEGIYNTVLLAIGRDSCTRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDIL 452
             P  ++   + +L+++GR   T  +GLE IG+   ++ GKIPV+   QT    VYAIGD++
Sbjct: 59233 PNLIQLEADNLLVSVGRRPYTEGLGLENIGLTDLDR-GKIPVDKYFQTKTEGVYAIGDVI 59409

Query: 453   DGKPELTPVAIQAGKLLARRLFGVSLEKCDYINIPTTVFT 492
             DG P L   A     +    + G      DY  +P+ V+T
Sbjct: 59410 DG-PMLAHKAEDEAFICVEGMLG-GHPHIDYNCVPSVVYT 59523


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,933,779
Number of Sequences: 15618
Number of extensions: 1242574
Number of successful extensions: 4862
Number of sequences better than 1.0e-04: 6
Number of HSP's better than  0.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 3669
Number of HSP's gapped (non-prelim): 2046
length of query: 615
length of database: 40,529,447
effective HSP length: 115
effective length of query: 500
effective length of database: 38,733,377
effective search space: 19366688500
effective search space used: 19366688500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)