TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000080_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Mus
musculus # Complete
         (496 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.675 of Sphaeroforma arctica JP610                          118   4e-26
supercont1.1152 of Sphaeroforma arctica JP610                          71   8e-12
supercont1.506 of Sphaeroforma arctica JP610                           56   3e-07

>supercont1.675 of Sphaeroforma arctica JP610
          Length = 50823

 Score =  118 bits (295), Expect = 4e-26
 Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = +1

Query: 44   DLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQA 103
            D +VIGGGSGG+A AKEAA+ G KVA+ DYV+PS +GT+WGLGGTCVNVGC+PKK+MH A
Sbjct: 7507 DFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKKIMHYA 7686

Query: 104  ALLGGMIRDAHHYGWEV-AQPVQHNWKTM 131
             L    + DA   GW+V A  ++H+W +M
Sbjct: 7687 GLQAINMHDAQALGWQVEADSIKHDWTSM 7773



 Score = 85.1 bits (209), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 56/90 (62%)
 Frame = +2

Query: 210   TSDDIFWLKESPGKTSVPAAEDVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTE 269
             TSDDIF L  SPG+T    A  ++LEC GFL  +G +  V MRSIPLRGFD+Q S  V +
Sbjct: 10970 TSDDIFSLYTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVAD 11149

Query: 270   HMESHGTQFLKGCVPSHIKKLPTNQLQVTW 299
              M+  G  F K  VPS IKK  + ++ V W
Sbjct: 11150 LMDKLGVTFHKQYVPSLIKKTSSGKVVVEW 11239



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 35/61 (57%), Positives = 44/61 (72%)
 Frame = +1

Query: 333   AGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTL 392
             AG+S  P N K+  D  + TSV HIYAIGD A+ RPELTP A++AG+ LA+R+FG SS  
Sbjct: 12610 AGLSALP-NGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKN 12786

Query: 393   M 393
             M
Sbjct: 12787 M 12789



 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +1

Query: 131  MAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHT 169
            + E VQNHV SLNWG+++ L+  KV Y N  A+F+D HT
Sbjct: 9637 LVETVQNHVGSLNWGYKLGLRSNKVNYINATAAFIDAHT 9753


>supercont1.1152 of Sphaeroforma arctica JP610
          Length = 21143

 Score = 70.9 bits (172), Expect = 8e-12
 Identities = 39/78 (50%), Positives = 48/78 (61%)
 Frame = +3

Query: 43    FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ 102
             +DLLVIGGGSGG+A A+  A+ G KV VA             +GGTCVNVGC+PKK+M  
Sbjct: 11025 YDLLVIGGGSGGIATARRCAEYGAKVGVA---------VGGVIGGTCVNVGCVPKKVMFM 11177

Query: 103   AALLGGMIRDAHHYGWEV 120
             AA     I D   YG++V
Sbjct: 11178 AASHMEGIHDLPGYGFDV 11231



 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +3

Query: 432   VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKL 479
             V+G+H +G  A E+TQGF + IK GA+      +V IHPT +EE+V +
Sbjct: 16725 VVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868



 Score = 48.5 bits (114), Expect = 4e-05
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +1

Query: 313   DTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 363
             + +LWAIGR P T+ LNLE AG+ T+ K   I VD  + T+V  ++A+GDV
Sbjct: 14596 ECMLWAIGRHPLTKQLNLEAAGVETSKKGH-INVDEFQNTNVDTVFALGDV 14745


>supercont1.506 of Sphaeroforma arctica JP610
          Length = 66308

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
 Frame = +1

Query: 41    QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKK-- 98
             + +DL+VIGGG GG   A +AAQ+G KVA  +      RG    LGGTC+NVGC+P K  
Sbjct: 54955 EEYDLVVIGGGPGGYIGAIKAAQMGMKVACVE-----GRGR---LGGTCLNVGCMPSKAL 55110

Query: 99    -----LMHQA 103
                  L HQA
Sbjct: 55111 LNSSHLYHQA 55140


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.318    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,545,264
Number of Sequences: 15618
Number of extensions: 1067895
Number of successful extensions: 3902
Number of sequences better than 1.0e-04: 3
Number of HSP's better than  0.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 2690
Number of HSP's gapped (non-prelim): 1930
length of query: 496
length of database: 40,529,447
effective HSP length: 113
effective length of query: 383
effective length of database: 38,764,613
effective search space: 14846846779
effective search space used: 14846846779
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)