TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 204 1e-52 T.congo.pschr.11 125 9e-29 T.congo.pschr4 68 2e-11 T.congo.pschr.8 67 3e-11 >TcIL3000_10_v2.embl Length = 3612457 Score = 204 bits (519), Expect = 1e-52 Identities = 143/457 (31%), Positives = 234/457 (51%), Gaps = 10/457 (2%) Frame = -1 Query: 286 AAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEY 345 A + K+V V+D LGGTCVNVGC+PKKLM A L +S FGWE+ Sbjct: 2272966 ATLYKKRVAVVDVQTVHGPPFFAALGGTCVNVGCVPKKLMVTGAQYMDQLRESAGFGWEF 2272787 Query: 346 N-QQVRHNWETMTKAIQNHISSLNWGYRLSLRE-KAVAYVNSYGEFVEHHKIK----ATN 399 + ++ NW+T+ A + +N Y ++ + + + +G + + + A Sbjct: 2272786 DASTIKANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFLGWGALEQKNVVTVREGADP 2272607 Query: 400 KKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALE 459 K + A +IATG P+ L I G E+CI+S++ F L P + L VG ++++E Sbjct: 2272606 KSKVKERLQAEHIIIATGSWPQMLKIPG-IEHCISSNEAFYLEEPPRRVLTVGGGFISVE 2272430 Query: 460 CAGFLAGF---GLDVTVMVR-SILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLE 515 AG + G VT+ R + +LRGFD + E++ + +G+ + P ++ Sbjct: 2272429 FAGIFNAYKPVGGKVTLCYRNNPILRGFDYTLREELTKQLVANGIDIMTNENPSKIELNP 2272250 Query: 516 KGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVND 575 GS + E +T++ + V++AIGR T + L+ +GV + +K G I V++ Sbjct: 2272249 DGSK------HVTFESGKTLD--VDVVMMAIGRLPRTGDLQLQTVGVNLTDK-GAIQVDE 2272097 Query: 576 VEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEY 635 +TNVP +YA+GD+ + LTPVAI G + +FG+ K D+ V + VF+ Sbjct: 2272096 FSRTNVPNIYAIGDV-TGRIMLTPVAINEGASVVDTIFGSKPRKTDHTRVASAVFSIPPI 2271920 Query: 636 GCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHI 695 G CGL+EE+A + ++K + +Y + F PL ++G + AKII + D V+G H+ Sbjct: 2271919 GTCGLTEEEAAKSFEK--VAVYLSCFTPLMHNISGSKYKKFVAKIITDHGD-GTVVGVHL 2271749 Query: 696 LGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732 LG ++ E+ Q MK +TIG+HPT E Sbjct: 2271748 LGDSSPEIIQAVGICMKLNAKISDFYNTIGVHPTSAE 2271638 >T.congo.pschr.11 Length = 4797796 Score = 125 bits (314), Expect = 9e-29 Identities = 113/429 (26%), Positives = 194/429 (45%), Gaps = 6/429 (1%) Frame = -2 Query: 310 LGGTCVNVGCIPKK-LMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLN 368 LGGTC+NVGCIP K L+H L A + ++G + V + M + ++ + L Sbjct: 4689096 LGGTCLNVGCIPSKALLHATHLYHDAHANFERYGLVGGKNVTMDVSKMQQQKESAVKGLT 4688917 Query: 369 WGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLG-IQG 427 G L++ V Y F+ + + G++ +IATG P L + Sbjct: 4688916 GGVEYLLKKNKVTYYKGEAGFLTPNTLNVKGLDGKDEKLEVKNTIIATGSEPTALPFLPF 4688737 Query: 428 DKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM-VRSILLRGFDQE 486 D++ ++S +L P K +V+G + LE A G +VTV+ D + Sbjct: 4688736 DEKVVLSSTGALALQRVPKKMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDAD 4688557 Query: 487 MAE-KVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLA 545 + + VG+ + +KF+ +V + KG L+V ++ ET+ + +L++ Sbjct: 4688556 VTDVLVGALKKNEKMKFMTN--TKVVAGVNKGDSVDLEV-EQAGGKRETLH--CDALLVS 4688392 Query: 546 IGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSG 605 +GR T +GL+KI V NE+ G + + +TNV VYA+GD+++ P L A G Sbjct: 4688391 VGRRPYTAGLGLDKINVATNER-GFVKIGSHFETNVAGVYAIGDVVDKGPMLAHKAEDEG 4688215 Query: 606 KLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLE 665 A+ L G +Y +P ++T E G +E++ KK + Y +P Sbjct: 4688214 VACAEILAGRP-GHVNYDVIPGVIYTMPEVASVGKTEDE----LKKAGV-AYKVGKFPFN 4688053 Query: 666 WTVAGR--ENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDT 723 + + K++ +K DR++G HI+ AGE+ AM+ G + + + T Sbjct: 4688052 ANSRAKAVAIEDGFVKVLTDKAT-DRILGVHIVCSAAGELIAEACLAMEYGASSEDVGRT 4687876 Query: 724 IGIHPTCGE 732 HPT E Sbjct: 4687875 CHAHPTMSE 4687849 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/92 (26%), Positives = 47/92 (51%) Frame = +2 Query: 170 LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQK 229 + +I +++VV+FS CP+ R ++L + V +D++ +G ++ + + Sbjct: 370328 IASMIGKNKVVVFSWVTCPYCVRAEKLLKARTNNITVHYVDKMSEGEHLRGEIYRTYKHE 370507 Query: 230 TVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261 TVP IF++ +GGC + G L LL+ Sbjct: 370508 TVPAIFIDGNFIGGCSDLEALDKEGKLDTLLK 370603 >T.congo.pschr4 Length = 1343510 Score = 67.8 bits (164), Expect = 2e-11 Identities = 91/373 (24%), Positives = 160/373 (42%), Gaps = 22/373 (5%) Frame = -3 Query: 362 NHISSLNWGYRLSL-REKAVAYVNSYGEFVEHHKIKATNKKGQETYY-TAAQFVIATGER 419 N +SS+ + L R V V F H++ + E + TA F+IATG Sbjct: 1340757 NEVSSVRETQTMELLRAAGVTTVFGKAMFSSPHELDVHSPSTNEYHVLTADYFIIATGSV 1340578 Query: 420 PR-YLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFG-LDVTVMVRS 477 PR + + D +T+D + LP P +++GA V E A A FG +VT++ ++ Sbjct: 1340577 PRQHEFVTVDHRRVVTTDTIMQLP-IPSSLVIIGAGAVGCEFASIYANFGRTEVTIIDKA 1340401 Query: 478 -ILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEK-----GSPGKLKVLAKSTEG 531 +L D+++A V ++ + GV+ ++ E+ G ++ K+ Sbjct: 1340400 RRILPKEDEDIANFVEEHLAKRGVRIHHTCTLFDLESWEESEEIGGCVYSVRHDNKTDSH 1340221 Query: 532 TETIEGVYNT--VLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPY--VYAV 587 E + Y L+++GR +GLE K+ G++ + DV VPY +YAV Sbjct: 1340220 NEALVETYEAERALVSLGRVPNLSGLGLENTACKVT--GGQVAL-DVFGRCVPYEHIYAV 1340050 Query: 588 GDILEDKPELTPVAIQSGKLLAQRLFG----ASLEKCDYINVPTTVFTPLEYGCCGLSEE 643 GD D+ L + G+ ++ + N+ T +F E C GL+EE Sbjct: 1340049 GDASADR-GLVNLGEAQGRGAVDHIYSERPQRPVNSSLLTNLSTILFLEEEMACVGLNEE 1339873 Query: 644 --KAIEV-YKKENLEIYHTLFWPLEWTVA-GRENNTCYAKIICNKFDHDRVIGFHILGPN 699 +A+ + Y + H L VA G C K++ R++G +G + Sbjct: 1339872 HCRALGIGYIVARFDYSH-----LSRAVAMGGAQGFC--KVVATNDREKRLLGVRAVGAH 1339714 Query: 700 AGEVTQGFAAAMK 712 AG + + + A++ Sbjct: 1339713 AGSIVEVASLAIR 1339675 >T.congo.pschr.8 Length = 2451971 Score = 67.4 bits (163), Expect = 3e-11 Identities = 91/373 (24%), Positives = 160/373 (42%), Gaps = 22/373 (5%) Frame = +1 Query: 362 NHISSLNWGYRLSL-REKAVAYVNSYGEFVEHHKIKATNKKGQETYY-TAAQFVIATGER 419 N +SS+ + L R V V F H++ + E + TA F+IATG Sbjct: 2090293 NEVSSVRETQTMELLRAAGVTTVFGKAMFSSPHELDVHSPSTNEYHVLTADYFIIATGSV 2090472 Query: 420 PR-YLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFG-LDVTVMVRS 477 PR + + D +T+D + LP P +++GA V E A A FG +VT++ ++ Sbjct: 2090473 PRQHEFVTVDHRRVVTTDTIMQLP-IPSSLVIIGAGAVGCEFASIYANFGRTEVTIIDKA 2090649 Query: 478 -ILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEK-----GSPGKLKVLAKSTEG 531 +L D+++A V ++ + GV+ ++ E+ G ++ K+ Sbjct: 2090650 RRILPKEDEDIANFVEEHLAKRGVRIHHTCTLFDLESWEESEEIGGCVYSVRHDNKTDSH 2090829 Query: 532 TETIEGVYNT--VLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPY--VYAV 587 E + Y L+++GR +GLE K+ G++ + DV VPY +YAV Sbjct: 2090830 NEALVETYEAERALVSLGRVPNLSGLGLENTACKVT--GGQVAL-DVFGRCVPYEHIYAV 2091000 Query: 588 GDILEDKPELTPVAIQSGKLLAQRLFG----ASLEKCDYINVPTTVFTPLEYGCCGLSEE 643 GD D+ L + G+ ++ + N+ T +F E C GL+EE Sbjct: 2091001 GDASADR-GLVNLGEAQGRGAVDHIYSERPQRPVNSSLLTNLSTILFLEEEMACVGLNEE 2091177 Query: 644 --KAIEV-YKKENLEIYHTLFWPLEWTVA-GRENNTCYAKIICNKFDHDRVIGFHILGPN 699 +A+ + Y + H L VA G C K++ R++G +G + Sbjct: 2091178 HCRALGIGYIVARFDYSH-----LSRAVAMGGAQGFC--KVVVTNDREKRLLGVRAVGAH 2091336 Query: 700 AGEVTQGFAAAMK 712 AG + + + A++ Sbjct: 2091337 AGSIVEVASLAIR 2091375 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,724,983 Number of Sequences: 11 Number of extensions: 330108 Number of successful extensions: 1575 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 1282 Number of HSP's gapped (non-prelim): 894 length of query: 754 length of database: 7,429,315 effective HSP length: 105 effective length of query: 649 effective length of database: 7,428,160 effective search space: 4820875840 effective search space used: 4820875840 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 107 (45.8 bits)