TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
         (754 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.675 of Sphaeroforma arctica JP610                           92   7e-18
supercont1.778 of Sphaeroforma arctica JP610                           59   7e-08
supercont1.1152 of Sphaeroforma arctica JP610                          55   7e-07
supercont1.160 of Sphaeroforma arctica JP610                           54   2e-06
supercont1.506 of Sphaeroforma arctica JP610                           50   2e-05
supercont1.149 of Sphaeroforma arctica JP610                           48   9e-05

>supercont1.675 of Sphaeroforma arctica JP610
          Length = 50823

 Score = 91.7 bits (226), Expect = 7e-18
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
 Frame = +1

Query: 266  YDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325
            YD D             AKEAA  G KV + D+V PS QGT WGLGGTCVNVGC+PKK+M
Sbjct: 7498 YDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKKIM 7677

Query: 326  HQAALLGQALCDSRKFGWEYN-QQVRHNWETM 356
            H A L    + D++  GW+     ++H+W +M
Sbjct: 7678 HYAGLQAINMHDAQALGWQVEADSIKHDWTSM 7773



 Score = 90.9 bits (224), Expect = 1e-17
 Identities = 42/84 (50%), Positives = 61/84 (72%)
 Frame = +2

Query: 434   TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGS 493
             TSDD+FSL   PG+TL VGASY++LEC GFL   G +V V +RSI LRGFD++ +EKV  
Sbjct: 10970 TSDDIFSLYTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVAD 11149

Query: 494   YMEQHGVKFLRKFIPVMVQQLEKG 517
              M++ GV F ++++P ++++   G
Sbjct: 11150 LMDKLGVTFHKQYVPSLIKKTSSG 11221



 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 23/49 (46%), Positives = 39/49 (79%)
 Frame = +1

Query: 568   SGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGAS 616
             +GK+  +  + T+V ++YA+GD  +++PELTPVA+Q+G+ LA+R+FG S
Sbjct: 12631 NGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGS 12777



 Score = 55.8 bits (133), Expect = 4e-07
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +1

Query: 706   GFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLD-ITQKGCUG 754
             G+A A+K G+TK + DDT+GIHPT  E F  LEIT+ SG   + + GC G
Sbjct: 15523 GYALALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG 15672



 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 20/33 (60%), Positives = 29/33 (87%)
 Frame = +3

Query: 674   NTCYAKIICNKFDHDRVIGFHILGPNAGEVTQG 706
             +TC AK++C K +++RV+GFH +GPNAGE+TQG
Sbjct: 14739 DTCLAKLVCLKNENERVVGFHFIGPNAGEITQG 14837



 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +1

Query: 356  MTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHH 393
            + + +QNH+ SLNWGY+L LR   V Y+N+   F++ H
Sbjct: 9637 LVETVQNHVGSLNWGYKLGLRSNKVNYINATAAFIDAH 9750


>supercont1.778 of Sphaeroforma arctica JP610
          Length = 43576

 Score = 58.5 bits (140), Expect = 7e-08
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
 Frame = -2

Query: 170  LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDD-GARVQEVLSEITNQ 228
            L+  I  S VV+FSKS C  S    ++F++L     V+ELD++   G  +   +  I+N 
Sbjct: 2886 LISFITDSPVVMFSKSDCEFSKEATKIFTTLQACVYVVELDRMGGYGESILNAVKRISNL 2707

Query: 229  KTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261
            KTVP I++N   +GGC Q      SG L ++L+
Sbjct: 2706 KTVPVIYINGTPIGGCTQLKALEASGELVRILR 2608


>supercont1.1152 of Sphaeroforma arctica JP610
          Length = 21143

 Score = 55.1 bits (131), Expect = 7e-07
 Identities = 23/50 (46%), Positives = 34/50 (68%)
 Frame = +3

Query: 688   DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737
             ++V+G HI+G  A E+TQGF  A+K G TK+  D+++ IHPT  E   T+
Sbjct: 16719 EKVVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868


>supercont1.160 of Sphaeroforma arctica JP610
          Length = 130988

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = -3

Query: 213    DDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261
              DDG  +Q  L EI+ Q+TVPN+FV   H+GG D    A +SG  QK+L+
Sbjct: 102738 DDGGALQAALQEISGQRTVPNVFVKSTHIGGNDDLQAAVRSGSFQKMLK 102592


>supercont1.506 of Sphaeroforma arctica JP610
          Length = 66308

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 39/136 (28%), Positives = 66/136 (48%)
 Frame = +1

Query: 496   EQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKI 555
             E + +K +    P+   + +  +P  +     ST     +E   + +L+++GR   T  +
Sbjct: 59146 EPNSIKLI*NSTPIQSNRSKNSNPFHI-----STPNLIQLEA--DNLLVSVGRRPYTEGL 59304

Query: 556   GLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGA 615
             GLE IG+   ++ GKIPV+   QT    VYA+GD++ D P L   A     +  + + G 
Sbjct: 59305 GLENIGLTDLDR-GKIPVDKYFQTKTEGVYAIGDVI-DGPMLAHKAEDEAFICVEGMLGG 59478

Query: 616   SLEKCDYINVPTTVFT 631
                  DY  VP+ V+T
Sbjct: 59479 H-PHIDYNCVPSVVYT 59523


>supercont1.149 of Sphaeroforma arctica JP610
          Length = 132930

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
 Frame = +3

Query: 491   VGSYMEQHGVKFLRKFIPVMVQQLEK--GSPGKLKVLAKSTEGTETIEGVYNTVLLAIGR 548
             V +  E+ G+K    ++    +++EK  G+  + +++     G +    V++ +L+A GR
Sbjct: 90225 VTNQFEKEGIKL---YLSSDYERIEKREGAEKETEIVLHMKNGDKF---VFDELLVAAGR 90386

Query: 549   DSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLL 608
                   + L+  GV  ++K+G + VND  QT    +YA GDI   K + T VA    +++
Sbjct: 90387 VPNVENLNLDVAGVDFDKKTGVV-VNDYLQTTNSNIYAAGDIC-FKYKFTHVADFLARIV 90560

Query: 609   AQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAI------EVYKK 651
              +        K   + +P  ++T  E    GL E+ AI      +VYK+
Sbjct: 90561 VRNALFFGKSKASDLLIPWAIYTEPEVAHVGLYEKDAIAKHGSVDVYKQ 90707


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,877,483
Number of Sequences: 15618
Number of extensions: 1726063
Number of successful extensions: 6977
Number of sequences better than 1.0e-04: 6
Number of HSP's better than  0.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 5067
Number of HSP's gapped (non-prelim): 3300
length of query: 754
length of database: 40,529,447
effective HSP length: 117
effective length of query: 637
effective length of database: 38,702,141
effective search space: 24653263817
effective search space used: 24653263817
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)