TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.266... 364 e-101 gi|338240660|gb|AFNH01002836.1| Gregarina niphandrodes asmbl.354... 162 3e-40 gi|338242696|gb|AFNH01001817.1| Gregarina niphandrodes asmbl.260... 127 1e-29 gi|338244915|gb|AFNH01000707.1| Gregarina niphandrodes asmbl.160... 51 2e-06 >gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.2669, whole genome shotgun sequence Length = 19534 Score = 364 bits (935), Expect = e-101 Identities = 225/561 (40%), Positives = 310/561 (55%), Gaps = 89/561 (15%) Frame = +1 Query: 283 AKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRK-F 341 AKEAA LG KV+ D+V PSPQG+ WGLGGTCVNVGCIPK +MH +A LGQ + S Sbjct: 12505 AKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNVGCIPKIIMHNSAKLGQLMDHSAAPL 12684 Query: 342 GWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEH-HKIKATNK 400 GW + W+ + K +Q +I LN+ YR LR V Y+N+ + + ++ K Sbjct: 12685 GWSGTDGLTFVWQDLVKTVQLYIKQLNFSYRRGLRSAGVEYINAKATLLAAPERAQSGAK 12864 Query: 401 KGQETYYT---------AAQFVIATGERPRYL--GIQGDKEYCITSDDLFSLPYCPGKTL 449 G+ YT A ++A G RP Y+ + G E +TSDDLFSL P KTL Sbjct: 12865 SGRVVEYTLKGERKEVRAKCVLVAVGGRP-YIPRDVPGAVELAVTSDDLFSLSREPKKTL 13041 Query: 450 VVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPV 509 VVGASY+ALECAGFL DVTV VRSI+LRGFD++ AE + M++ G KFL V Sbjct: 13042 VVGASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRQCAEHIQLVMKEQGTKFLEHEQVV 13221 Query: 510 MVQQL------------EKGSP--------GKLKVLAKSTEGTETIEGVYNTVLLAIGRD 549 +Q++ ++G+ G K+L + G E + ++TV+ A+GR Sbjct: 13222 SLQRVGEPDVAASDLAGDRGADTTSNTTADGGDKILVRFASGREEM---FDTVVYAVGRR 13392 Query: 550 SCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLA 609 +CT+ +G E G+ ++ SGKI V+++EQT+ P VYA+GD+ +PELTPVAI++G+LLA Sbjct: 13393 ACTQSLGCEAAGIAMHPASGKIVVDELEQTSAPGVYAIGDVCHGRPELTPVAIKAGELLA 13572 Query: 610 QRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPL----- 664 +RLFG + E Y N+PT VFTP+EYGCCGLSEE AI Y ++N+E++ F + Sbjct: 13573 RRLFGGANEPMVYTNIPTVVFTPIEYGCCGLSEEDAITRYGQDNIEVFLFGFNSVPVSAC 13752 Query: 665 EWTVAGRENNTCY---------AKIICNKFDHDRVIGFHILGPN---------------- 699 W A + +KIIC K D ++++G+H + N Sbjct: 13753 HWKKALSTRKDEFDLDVTPLNLSKIICKKPD-NKIVGYHCIAMNVSGHTSRAQLGITPRV 13929 Query: 700 -------------------------AGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVF 734 AGE TQG+A A+KCGLTK LD +GIHPT E F Sbjct: 13930 DWSGNWGRLARSDWLVWSGRKMHV*AGETTQGYALALKCGLTKDDLDAVVGIHPTDAESF 14109 Query: 735 TTLEITKSSGLD-ITQKGCUG 754 ++ IT+ SG + GC G Sbjct: 14110 HSMTITRRSGESFMAAGGCGG 14172 >gi|338240660|gb|AFNH01002836.1| Gregarina niphandrodes asmbl.3549, whole genome shotgun sequence Length = 8558 Score = 162 bits (411), Expect = 3e-40 Identities = 122/399 (30%), Positives = 192/399 (48%), Gaps = 45/399 (11%) Frame = +3 Query: 383 VNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLP 442 + S +V K KAT E A + V+A G R + LG+ G+ + SD F+L Sbjct: 6948 LKSSARWVVRVKGKATTGGVPEVRLCAERVVVAVGSRSKKLGVPGEATVAVGSDGFFALE 7127 Query: 443 YCPGKTLVVGASYVALECAGFLAGFGLDVTVMVR-SILLRGFDQEMAEKVGSYMEQHGVK 501 P K VVGA Y+A+E AG L G G + + +R +LR FD+ ++ K ++E+ G Sbjct: 7128 RRPEKVAVVGAGYIAVEFAGVLTGLGCETHLFLRHEKVLRSFDEMLSTKCTEFLERQGCH 7307 Query: 502 FLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIG 561 R V++ + GK ++ K + ++++++AIGR+ T +GL+ + Sbjct: 7308 LHRG---AQVEEFIVDANGK-QIRLKDGRTFDH----FDSIIVAIGREPNTDALGLDALN 7463 Query: 562 VKINEKSGKIPVNDVEQ------------------------TNVPYV----------YAV 587 V+ + +G I V+D + TNV V YA+ Sbjct: 7464 VRC-DSAGHIQVDDFQNVCFGQDNHAKDNHAKDDHAKDDHATNVSDVGPAVGADTGLYAL 7640 Query: 588 GDILEDKPELTPVAIQSGKLLAQRLF--GASLEKCDYINVPTTVFTPLEYGCCGLSEEKA 645 GD++ + ELTP+AI +G+ LA RL+ G K Y +VPT VF+ G GLSE +A Sbjct: 7641 GDVI-GRVELTPMAIAAGRRLADRLYLEGFEAAKVAYEDVPTVVFSHPPIGTVGLSEAQA 7817 Query: 646 IE--------VYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILG 697 E VY + +Y+ +F V E Y K++C K H++V+G H++G Sbjct: 7818 RERFGNDDVLVYTNTAVNLYYNVF-----DVIPTEKPKTYIKLVCVKHLHEQVVGIHVIG 7982 Query: 698 PNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTT 736 A E+ QGF A+K TK LD+ + +HP+ E T Sbjct: 7983 MGADEIIQGFGLALKLHATKNDLDNVVAVHPSAAEEIVT 8099 Score = 45.1 bits (105), Expect = 9e-05 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = +1 Query: 268 YDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQ 327 YD CAK A+ G +V V++ + GGTCVNVGC+PKK+M Sbjct: 6433 YDLVVIGAGSGGVACAKRASSHGARVAVVE---------AGAFGGTCVNVGCVPKKIMWW 6585 Query: 328 AALLGQALCDSRKFG 342 A+ + L ++ +G Sbjct: 6586 ASQAREFLQEAHHYG 6630 >gi|338242696|gb|AFNH01001817.1| Gregarina niphandrodes asmbl.2608, whole genome shotgun sequence Length = 26051 Score = 127 bits (319), Expect = 1e-29 Identities = 122/437 (27%), Positives = 196/437 (44%), Gaps = 15/437 (3%) Frame = -3 Query: 311 GGTCVNVGCIPKKLM-------HQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNH 363 GGTC+NVGCIP K M QA + L D G E + V+H E + + + Sbjct: 5976 GGTCLNVGCIPTKTMLHITELAEQAGQQAKVLRDKPGSGVELAKLVKHR-EQVVQQLGKG 5800 Query: 364 ISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYL 423 I L + K A FV K+ N++ + A ++ATG P L Sbjct: 5799 IGF------LFKKNKVEALWGESARFVSPTKLAFGNREVE-----AKHVIVATGSTPAEL 5653 Query: 424 -GIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRG 482 G++ D+++ ++SD SL P K LVVG V LE A G V V+ + G Sbjct: 5652 PGLKIDEKHILSSDGALSLTQAPKKLLVVGGGVVGLEFATVFRRLGSSVEVLEFLPQIGG 5473 Query: 483 -FDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNT 541 D ++A+ + +E+ GVK + + V +E G + GT T++ + Sbjct: 5472 ALDTQVAQSLRKILEKQGVK-IHTGVAVQGATVE----GDHVTVTAKANGT-TMQFAGDK 5311 Query: 542 VLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVA 601 VL+ +GR + T+ +GLE++GV+ +++G+I V++ TNV + A+GD + P L A Sbjct: 5310 VLVCVGRRANTQNLGLEELGVE-KDRAGRILVDEHYNTNVAPILAIGDCIPG-PMLAHKA 5137 Query: 602 IQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLF 661 + G + + G Y VP V+T E G +E++ K+ Y Sbjct: 5136 EEDGVAAVENILGHPASNHFYKYVPAVVYTSPECATVGATEDEL-----KQARVAYKAAS 4972 Query: 662 WPLEWTVAGRENNTC------YAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGL 715 +P+ A + C + K++ + R++G I+ AGE+ A+K G+ Sbjct: 4971 FPM----AANSRSKCDGHTDGFVKVLVDPAT-TRILGASIIAECAGEMITELTLAVKYGI 4807 Query: 716 TKQLLDDTIGIHPTCGE 732 T L TI HPT E Sbjct: 4806 TATQLAATIHPHPTISE 4756 >gi|338244915|gb|AFNH01000707.1| Gregarina niphandrodes asmbl.16012, whole genome shotgun sequence Length = 77023 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Frame = +2 Query: 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVE--CNVLELDQVDDGARVQEVLSEITNQKT 230 ++ + VV+FSK+YCP+ K+ + V ELD + +G+ +Q L ++ KT Sbjct: 76091 MLSSAPVVVFSKTYCPYCKIAKDALQKAVTDEYVKVYELDTMSEGSSIQAQLPALSGIKT 76270 Query: 231 VPNIFVNKVHVG 242 VP +F+NK +G Sbjct: 76271 VPQVFLNKEFIG 76306 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,131,909 Number of Sequences: 3680 Number of extensions: 257218 Number of successful extensions: 2055 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 655 Number of HSP's successfully gapped in prelim test: 163 Number of HSP's that attempted gapping in prelim test: 1175 Number of HSP's gapped (non-prelim): 1238 length of query: 754 length of database: 5,120,956 effective HSP length: 102 effective length of query: 652 effective length of database: 4,745,596 effective search space: 3094128592 effective search space used: 3094128592 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 105 (45.1 bits)