TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325188445|emb|FR824220.1| Albugo laibachii Nc14, genomic cont... 153 5e-37 gi|325189095|emb|FR824246.1| Albugo laibachii Nc14, genomic cont... 148 2e-35 gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic cont... 82 2e-15 gi|325192680|emb|FR824499.1| Albugo laibachii Nc14, genomic cont... 62 8e-15 gi|325182177|emb|FR824069.1| Albugo laibachii Nc14, genomic cont... 72 1e-12 gi|325180196|emb|FR824050.1| Albugo laibachii Nc14, genomic cont... 50 2e-08 >gi|325188445|emb|FR824220.1| Albugo laibachii Nc14, genomic contig CONTIG_175_NC14_v4_54737_245 Length = 54737 Score = 153 bits (386), Expect = 5e-37 Identities = 131/476 (27%), Positives = 220/476 (46%), Gaps = 10/476 (2%) Frame = -1 Query: 267 DYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKK-LM 325 +YD A +AA LG K + ++ +GT LGGTC+NVGCIP K L+ Sbjct: 26069 EYDLIVIGGGPGGYVAAIKAAQLGMKTVCIE-----SRGT---LGGTCLNVGCIPSKALL 25914 Query: 326 HQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNS 385 H + + A D + G E + +R N+ M KA + + L G ++ VAY+ Sbjct: 25913 HSSHMFHTAQHDFKAIGIEASD-LRLNFGKMMKAKEKSVKVLTSGIEGLFKKNKVAYIKG 25737 Query: 386 YGEFVEHHKIKAT---NKKGQETYYTAAQFVIATGERPRYLG---IQGDKEYCITSDDLF 439 +G V ++ + KG+ET A +IATG L + +K + S Sbjct: 25736 HGTIVGKDQVSVSYSDESKGKETIQ-AKNILIATGSEVSPLPPCPVDNEKGRIVDSTGAL 25560 Query: 440 SLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM-VRSILLRGFDQEMAEKVGSYMEQH 498 L P + +VVGA + LE G +VTV+ + + G D E+ + +++ Sbjct: 25559 VLKSTPKEMVVVGAGVIGLELGSVYRRLGANVTVIEYLNHVCPGLDMELGREFAKTLQKQ 25380 Query: 499 GVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLE 558 G KF KF + K + ++ + + +G + VL+A GR T+ +GLE Sbjct: 25379 GFKF--KFATKVTST--KVNEDRVTITMEDAKGGNETNMECDVVLVATGRRPFTQNLGLE 25212 Query: 559 KIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLE 618 +G++ +K G+IPV++ +T VP +YA+GD++ P L A + G + + G Sbjct: 25211 NLGIQ-TDKLGRIPVDNHFRTLVPNIYAIGDVIAG-PMLAHKAEEEGIAAVEIMLGKQ-G 25041 Query: 619 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRE--NNTC 676 +Y +P ++T E C G +EE+ KE Y+ +P+ R Sbjct: 25040 HVNYNAIPGVIYTFPEVACVGRTEEQL-----KEEGVSYNVGKFPMIANSRARAVGETDG 24876 Query: 677 YAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732 + K++ K D+DR++G H++ NAGE+ ++ G + + + T HPT E Sbjct: 24875 FVKVLAQK-DNDRILGIHLMTSNAGEMIAEGVLGIEYGASSEDIGRTCHAHPTLSE 24711 >gi|325189095|emb|FR824246.1| Albugo laibachii Nc14, genomic contig CONTIG_201_NC14_v4_47019_231 Length = 47019 Score = 148 bits (373), Expect = 2e-35 Identities = 90/245 (36%), Positives = 143/245 (58%), Gaps = 4/245 (1%) Frame = -3 Query: 497 QHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIG 556 ++GV F+RK ++++ K KL + A+ + ++T ++ +++A+GR T +G Sbjct: 33478 RNGVNFVRKS---HLEKIVKSEDDKLAITARIGDQSQTFSN-FDQIVMAVGRSPRTVDLG 33311 Query: 557 LEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGAS 616 LE +GV++NE +G I V+ E T++P VYA+GD+ ELTPVAI +G+ LA RLF Sbjct: 33310 LEDVGVELNE-TGHIIVDAQENTSIPGVYALGDVTTTGWELTPVAIAAGRRLADRLFNNE 33134 Query: 617 LEKCDYIN-VPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVA---GRE 672 E C Y + +PT VF+ G G +E +AI Y +EN++ Y + F L +++A ++ Sbjct: 33133 KEACLYYHQIPTVVFSHPPLGTIGYTEPEAIAKYGEENVKCYSSKFVNLLYSMAEDPEKK 32954 Query: 673 NNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732 TC K++C + V+G H+ G A E+ QGF AMK G TK D+ + IHPT E Sbjct: 32953 KKTC-MKLVC-VGSKETVVGLHVAGDGADEMVQGFGVAMKMGATKADFDNIVAIHPTASE 32780 Query: 733 VFTTL 737 T+ Sbjct: 32779 ELVTM 32765 Score = 71.6 bits (174), Expect = 2e-12 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 10/190 (5%) Frame = -2 Query: 283 AKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFG 342 A+ AA G KV++++ + G GGTCVN GC+PKK+M+ AA + + + + Sbjct: 34235 ARRAATYGAKVLLIE---RHREYEGAGYGGTCVNYGCVPKKVMYNAAAHVEHIERAPDYS 34065 Query: 343 ---WEYNQQVRH-------NWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEH 392 + H +W M +I LN Y +L + V + + Sbjct: 34064 IRPFASKGDTSHSFSFGDFDWGRMKVKRDAYIERLNGIYTRNLANAKIDTVTGIAKLIAK 33885 Query: 393 HKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVG 452 +++ Q++++ +IA G P I G E+ I SD F L P K VVG Sbjct: 33884 DRVQV----NQDSFFEGKHILIAVGGTPAMPSIPG-IEHAIDSDGFFKLETQPKKVAVVG 33720 Query: 453 ASYVALECAG 462 A Y+A+E AG Sbjct: 33719 AGYIAVEIAG 33690 >gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic contig CONTIG_2_NC14_v4_395950_240 Length = 395950 Score = 81.6 bits (200), Expect = 2e-15 Identities = 40/90 (44%), Positives = 57/90 (63%) Frame = +3 Query: 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 232 +I +VIFSKSYCP+ + K L + LG ++ELD DG +QE L +T+Q TVP Sbjct: 78453 VIRNHPLVIFSKSYCPYCKKAKRLLADLGATPFLVELDLRPDGKAIQEFLMHLTHQNTVP 78632 Query: 233 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 N+FV + +GG D+T + + SG L+ LQE Sbjct: 78633 NVFVQQKSIGGADKTQKMFDSGELKHRLQE 78722 >gi|325192680|emb|FR824499.1| Albugo laibachii Nc14, genomic contig CONTIG_456_NC14_v4_16186_319 Length = 16186 Score = 62.4 bits (150), Expect(2) = 8e-15 Identities = 24/45 (53%), Positives = 36/45 (80%) Frame = +2 Query: 212 VDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLL 256 +DDGAR+QE+L+E+T Q+TVPN+F+ H+GGCD T +++G L Sbjct: 8210 IDDGARIQEILTELTGQRTVPNVFLKGKHIGGCDDTLANHKAGKL 8344 Score = 37.4 bits (85), Expect(2) = 8e-15 Identities = 13/32 (40%), Positives = 26/32 (81%) Frame = +3 Query: 180 VIFSKSYCPHSTRVKELFSSLGVECNVLELDQ 211 ++FSK+YCP++++VK+L ++L + +ELD+ Sbjct: 8067 LVFSKTYCPYASQVKDLLNTLCINYETIELDK 8162 >gi|325182177|emb|FR824069.1| Albugo laibachii Nc14, genomic contig CONTIG_24_NC14_v4_177300_238 Length = 177300 Score = 72.4 bits (176), Expect = 1e-12 Identities = 100/438 (22%), Positives = 178/438 (40%), Gaps = 42/438 (9%) Frame = +2 Query: 356 MTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYT-----AA 410 + + IQ+ + L R + + Y++ + F + H++ G T A+ Sbjct: 94865 VNRVIQSEVDFL----RTQFKSARIDYISGHARFEDDHQVSIIEADGPAHEKTTKRLRAS 95032 Query: 411 QFVIATGERPRYL-GIQGDKEYCITSDDLFS--LPYCPGKTLVVGASYVALECAGFLAGF 467 +F++A G RP + I D + SD + S + P +VVGA + +E A L Sbjct: 95033 KFLVACGTRPAHNPNIPIDGKVIFDSDQILSWNIRQLPRSLIVVGAGVIGMEYASMLNVI 95212 Query: 468 -GLDVTVMV-RSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVL 525 G VTV+ R +L D E+ + M HG +FL + +++ +E G L Sbjct: 95213 RGHSVTVIDGREEILSFCDDEIISTLTHEMRNHGARFL---LGEIIESVEVGVHQYFSRL 95383 Query: 526 AKS--------TEGTETIEGVYNTVLL-AIGRDSCTRKIGLEKIGVKINEKSGKIPVNDV 576 S + G ++ + V+ LL +GR + T + LE G+ N + G + VN Sbjct: 95384 HIS**KSSRGVSVGLKSGKKVHGDALLYVVGRQANTDGLNLEAAGLSRNPR-GLLSVNTK 95560 Query: 577 EQTNVPYVY----------------AVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC 620 QT P+++ AVGD + P L +++ G+L + ++ + Sbjct: 95561 YQTKKPHMFVFISFFDSSTNANFSFAVGDCI-GAPSLASTSMEQGRLASCYMWNENEAND 95737 Query: 621 DYI-------NVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGREN 673 D I N P ++T E G +E++ + K N EI + L + Sbjct: 95738 DSIPSQLTTGNFPYGIYTIPEISMVGKTEKELTSL--KMNYEIGVAKYSELAKGQMSGAS 95911 Query: 674 NTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733 KI+ + ++ G H +G A E+ A+ G T D + +PT E Sbjct: 95912 ADGMLKILFDPISL-KLYGVHAIGEGATEIIHIGQVAIAMGATLTYFRDAVFNYPTLAEA 96088 Query: 734 FTTLEITKSSGLDITQKG 751 + + +GL ++G Sbjct: 96089 Y---RVAALNGLGRLRRG 96133 >gi|325180196|emb|FR824050.1| Albugo laibachii Nc14, genomic contig CONTIG_5_NC14_v4_277187_236 Length = 277187 Score = 49.7 bits (117), Expect(2) = 2e-08 Identities = 21/55 (38%), Positives = 34/55 (61%) Frame = +2 Query: 174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQ 228 I+ +VV+FSK CP + K+L + L E V+EL++++DG +Q L E T + Sbjct: 219647 IQEHKVVVFSKLNCPFCDKAKKLLTELSAEFEVIELNEINDGVNIQNALQEKTGE 219811 Score = 44.7 bits (104), Expect(2) = 3e-06 Identities = 19/55 (34%), Positives = 31/55 (56%) Frame = +2 Query: 174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQ 228 + +VV+FSK+YCPH E+ S E V+EL ++ D ++Q L + T + Sbjct: 201182 VNEHKVVVFSKAYCPHCVEAIEVLSKHSAEFKVIELTEMTDFDKIQNALEKKTGE 201346 Score = 28.1 bits (61), Expect(2) = 2e-08 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 228 QKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261 Q TVPNIF++ VGGC + G L +L+ Sbjct: 219867 QATVPNIFIDGKFVGGCSDLNLLNKKGELIGMLK 219968 Score = 25.8 bits (55), Expect(2) = 3e-06 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 228 QKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261 ++TVP IF++ VGGC + G L +L+ Sbjct: 201403 ERTVPRIFIDGKFVGGCSDLNLLNKKGELIGMLK 201504 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,007,594 Number of Sequences: 3816 Number of extensions: 390392 Number of successful extensions: 1760 Number of sequences better than 1.0e-04: 6 Number of HSP's better than 0.0 without gapping: 193 Number of HSP's successfully gapped in prelim test: 78 Number of HSP's that attempted gapping in prelim test: 1377 Number of HSP's gapped (non-prelim): 733 length of query: 754 length of database: 10,913,379 effective HSP length: 108 effective length of query: 646 effective length of database: 10,501,251 effective search space: 6783808146 effective search space used: 6783808146 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 108 (46.2 bits)